Browse Element(s) Details


OsAffx.31608.1.S1_at

Description tigr:9640.m00532
TID=OsAffx.31608.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0612010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g06080OsAffx.19515.1.S1_s_at11/1112+2834309..2836130expressed protein
LOC_Os12g06080Os.5875.1.S1_at11/1112+2834309..2836130expressed protein
LOC_Os12g06090NANA12+2844232..2844941hypothetical protein
LOC_Os12g06100Os.21415.1.S1_at11/1112+2850829..2855264TLD family protein, expressed
LOC_Os12g06110OsAffx.12125.3.S1_x_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.3.S1_at11/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06110OsAffx.12125.1.S1_x_at4/1112+2856318..2857426Leucine Rich Repeat family protein
LOC_Os12g06120OsAffx.31608.1.S1_at10/1112+2858531..2859785expressed protein
LOC_Os12g06120Os.56500.1.S1_at1/1112+2858531..2859785expressed protein
LOC_Os12g06130NANA12+2867423..2868868hypothetical protein
LOC_Os12g06140OsAffx.29544.1.S1_x_at4/1112+2883647..2885971hypothetical protein
LOC_Os12g06140Os.52812.1.S1_at1/1112+2883647..2885971hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31608.1.S1_at--445--5471Chr12:2858566..2858644 (25 bp)
GAACTCAAAGGTTATGTTGCCTCTG
LOC_Os12g06120
OsAffx.31608.1.S1_at--218--8811Chr12:2858634..2858658 (25 bp)
TGTTGCCTCTGTATAACTGTATCGA
LOC_Os12g06120
OsAffx.31608.1.S1_at--108--6911Chr12:2858652..2858676 (25 bp)
GTATCGAGCAAAGATCTTACTTGGA
LOC_Os12g06120
OsAffx.31608.1.S1_at--546--3611Chr12:2858671..2858695 (25 bp)
CTTGGATACTTGGATGGCCCCTTTC
LOC_Os12g06120
OsAffx.31608.1.S1_at--711--4531Chr12:2858687..2858711 (25 bp)
GCCCCTTTCCATGTGTCAAAACTGA
LOC_Os12g06120
OsAffx.31608.1.S1_at--968--2071Chr12:2858715..2858739 (25 bp)
ACATTTTGTCTAACTCATTTTCTGA
LOC_Os12g06120
OsAffx.31608.1.S1_at--24--10611Chr12:2858734..2858758 (25 bp)
TTCTGATATTAGTTTCTGGCCCATT
LOC_Os12g06120
OsAffx.31608.1.S1_at--457--10051Chr12:2858743..2858765 (23 bp)
TAGTTTCTGGCCCATTTCTGGTGAC
LOC_Os12g06120
OsAffx.31608.1.S1_at--592--4531NONE
GCCCATTTCTGGTGACTTGAGGTCA
NONE
OsAffx.31608.1.S1_at--477--6651Chr12:2859431..2859455 (25 bp)
GTTGAGGTCCAGACTATTAAGTATA
LOC_Os12g06120
OsAffx.31608.1.S1_at--138--5231Chr12:2859442..2859466 (25 bp)
GACTATTAAGTATATCGGGTGACGA
LOC_Os12g06120
Target Sequence 
GAACTCAAAGGTTATGTTGCCTCTGTATAACTGTATCGAGCAAAGATCTTACTTGGATACTTGGATGGCCCCTTTCCATG
TGTCAAAACTGAAATACATTTTGTCTAACTCATTTTCTGATATTAGTTTCTGGCCCATTTCTGGTGACTTGAGGTCAGCC
TTAGTCAATGGTGAGGACCGGGACTATGCTCAGGGAGGAGCAGAGGTGACTAGAGTCAGGATTCTTGGAGGTCAACTTCA
GTCAACGGTGGGGATCGGGACTAAACTCAAGGAGGAGTTGAGGTCCAGACTATTAAGTATATCGGGTGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31608.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis