Browse Element(s) Details


OsAffx.31662.1.S1_at

Description tigr:9640.m00884
TID=OsAffx.31662.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to peroxidase ATP29a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0946011/11Peroxidase precursor, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09400OsAffx.4856.1.S1_x_at1/1112+4924925..4929037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g09410OsAffx.4856.1.S1_x_at1/1112+4930687..4932183retrotransposon protein, putative, LINE subclass
LOC_Os12g09420Os.14491.2.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09420Os.47463.1.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09430OsAffx.26864.1.S1_at8/1112+4937526..4941050Transposable element protein, putative, Transposase_28
LOC_Os12g09440OsAffx.19575.1.S1_at10/1112+4943228..4945951hypothetical protein
LOC_Os12g09440Os.51185.2.S1_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.17561.1.S1_x_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.30217.1.S1_x_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09450OsAffx.19576.1.S1_at11/1112+4949953..4950303hypothetical protein
LOC_Os12g09460OsAffx.31662.1.S1_at11/1112+4953194..4954050Peroxidase precursor, putative
LOC_Os12g09470NANA12+4967005..4967388hypothetical protein
LOC_Os12g09480NANA12+4968810..4975422retrotransposon protein, putative, unclassified
LOC_Os12g09490NANA12+4976008..4978837hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0004601molecular_functionperoxidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31662.1.S1_at--856--9151Chr12:4953989..4954013 (25 bp)
TGCGCTCGCATACAACGCTCGACTT
LOC_Os12g09460
OsAffx.31662.1.S1_at--799--4951Chr12:4953982..4954006 (25 bp)
GCATACAACGCTCGACTTCTCTTCT
LOC_Os12g09460
OsAffx.31662.1.S1_at--287--10591Chr12:4953966..4953990 (25 bp)
TTCTCTTCTCTCATACACGTGTCAT
LOC_Os12g09460
OsAffx.31662.1.S1_at--245--9571Chr12:4953963..4953987 (25 bp)
TCTTCTCTCATACACGTGTCATTAA
LOC_Os12g09460
OsAffx.31662.1.S1_at--12--3571Chr12:4953955..4953979 (25 bp)
CATACACGTGTCATTAAATTTCTGG
LOC_Os12g09460
OsAffx.31662.1.S1_at--459--8731Chr12:4953947..4953971 (25 bp)
TGTCATTAAATTTCTGGCACTTGTG
LOC_Os12g09460
OsAffx.31662.1.S1_at--232--8511Chr12:4953933..4953957 (25 bp)
TGGCACTTGTGGACCAATGGGCTGT
LOC_Os12g09460
OsAffx.31662.1.S1_at--450--2071Chr12:4953929..4953953 (25 bp)
ACTTGTGGACCAATGGGCTGTCCCA
LOC_Os12g09460
OsAffx.31662.1.S1_at--202--8091Chr12:4953923..4953947 (25 bp)
GGACCAATGGGCTGTCCCACTTTAG
LOC_Os12g09460
OsAffx.31662.1.S1_at--691--2971Chr12:4953922..4953942 (21 bp)
AATGGGCTGTCCCACTTTAGGCGCC
LOC_Os12g09460
OsAffx.31662.1.S1_at--741--7571Chr12:4953463..4953939 (25 bp)
GGGCTGTCCCACTTTAGGCGCCCAA
LOC_Os12g09460
Target Sequence 
TGCGCTCGCATACAACGCTCGACTTCTCTTCTCTCATACACGTGTCATTAAATTTCTGGCACTTGTGGACCAATGGGCTG
TCCCACTTTAGGCGCCCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31662.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis