Browse Element(s) Details


OsAffx.17561.1.S1_x_at

Description tigr:9637.m00245
TID=OsAffx.17561.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g094401/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09380OsAffx.19574.1.S1_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_x_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09390OsAffx.31661.1.S1_at11/1112+4921841..4923598hypothetical protein
LOC_Os12g09390OsAffx.31661.2.S1_at1/1112+4921841..4923598hypothetical protein
LOC_Os12g09400OsAffx.4856.1.S1_x_at1/1112+4924925..4929037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g09410OsAffx.4856.1.S1_x_at1/1112+4930687..4932183retrotransposon protein, putative, LINE subclass
LOC_Os12g09420Os.14491.2.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09420Os.47463.1.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09430OsAffx.26864.1.S1_at8/1112+4937526..4941050Transposable element protein, putative, Transposase_28
LOC_Os12g09440OsAffx.19575.1.S1_at10/1112+4943228..4945951hypothetical protein
LOC_Os12g09440Os.51185.2.S1_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.17561.1.S1_x_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.30217.1.S1_x_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09450OsAffx.19576.1.S1_at11/1112+4949953..4950303hypothetical protein
LOC_Os12g09460OsAffx.31662.1.S1_at11/1112+4953194..4954050Peroxidase precursor, putative
LOC_Os12g09470NANA12+4967005..4967388hypothetical protein
LOC_Os12g09480NANA12+4968810..4975422retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17561.1.S1_x_at--589--4111Chr09:2177231..2177255 (25 bp)
CGCAACGCGAGAGTGACTGAAAAGT
NONE
OsAffx.17561.1.S1_x_at--151--2331Chr09:2177251..2177275 (25 bp)
AAAGTTGGGAAGTGACAAGTCTCAT
NONE
OsAffx.17561.1.S1_x_at--77--7171Chr09:2177269..2177293 (25 bp)
GTCTCATGTGTTGGGTGCATCATGG
NONE
OsAffx.17561.1.S1_x_at--24--9631Chr09:2177272..2177296 (25 bp)
TCATGTGTTGGGTGCATCATGGAGT
NONE
OsAffx.17561.1.S1_x_at--777--6611Chr09:2177278..2177302 (25 bp)
GTTGGGTGCATCATGGAGTGCGGGA
NONE
OsAffx.17561.1.S1_x_at--985--46519Chr12:4943755..4943774 (20 bp)
GCGGGATTAAAAGCGTACATCCACT
LOC_Os12g09440
OsAffx.17561.1.S1_x_at--677--2091Chr09:2177313..2177437 (25 bp)
ACATCCACTGCAGTAACAGGGCTGG
NONE
OsAffx.17561.1.S1_x_at--724--9211Chr09:2177316..2177440 (25 bp)
TCCACTGCAGTAACAGGGCTGGACA
NONE
OsAffx.17561.1.S1_x_at--702--1971Chr09:2177319..2177443 (25 bp)
ACTGCAGTAACAGGGCTGGACAAGA
NONE
OsAffx.17561.1.S1_x_at--858--3431Chr09:2177427..2177447 (21 bp)
CAGTAACAGGGCTGGACAAGATTGT
NONE
OsAffx.17561.1.S1_x_at--1034--7571Chr09:2177431..2177455 (25 bp)
GGGCTGGACAAGATTGTGTGACCTT
NONE
Target Sequence 
CGCAACGCGAGAGTGACTGAAAAGTTGGGAAGTGACAAGTCTCATGTGTTGGGTGCATCATGGAGTGCGGGATTAAAAGC
GTACATCCACTGCAGTAACAGGGCTGGACAAGATTGTGTGACCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17561.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis