Browse Element(s) Details


OsAffx.31661.1.S1_at

Description tigr:9640.m00877
TID=OsAffx.31661.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0939011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g09340OsAffx.31659.2.S1_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09340OsAffx.31659.1.S1_s_at11/1112+4896621..4897088hypothetical protein
LOC_Os12g09350Os.52242.1.S1_at1/1112+4903456..4906785transposon protein, putative, Mariner sub-class
LOC_Os12g09360OsAffx.31660.2.S1_x_at10/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.1.S1_at5/1112+4907373..4909076expressed protein
LOC_Os12g09360OsAffx.31660.3.S1_x_at4/1112+4907373..4909076expressed protein
LOC_Os12g09370OsAffx.19573.1.S1_at11/1112+4909942..4910623hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09380OsAffx.19574.1.S1_x_at11/1112+4919918..4920307hypothetical protein
LOC_Os12g09390OsAffx.31661.1.S1_at11/1112+4921841..4923598hypothetical protein
LOC_Os12g09390OsAffx.31661.2.S1_at1/1112+4921841..4923598hypothetical protein
LOC_Os12g09400OsAffx.4856.1.S1_x_at1/1112+4924925..4929037retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g09410OsAffx.4856.1.S1_x_at1/1112+4930687..4932183retrotransposon protein, putative, LINE subclass
LOC_Os12g09420Os.14491.2.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09420Os.47463.1.S1_x_at1/1112+4932786..4936184transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g09430OsAffx.26864.1.S1_at8/1112+4937526..4941050Transposable element protein, putative, Transposase_28
LOC_Os12g09440OsAffx.19575.1.S1_at10/1112+4943228..4945951hypothetical protein
LOC_Os12g09440Os.51185.2.S1_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.17561.1.S1_x_at1/1112+4943228..4945951hypothetical protein
LOC_Os12g09440OsAffx.30217.1.S1_x_at1/1112+4943228..4945951hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31661.1.S1_at--1092--3371Chr12:4922516..4923022 (25 bp)
CAGCACGTACTGGAGGAGACCTCTG
LOC_Os12g09390
OsAffx.31661.1.S1_at--90--10351Chr12:4923049..4923073 (25 bp)
TTATTATCCTTCACCTAAGTTCCTT
LOC_Os12g09390
OsAffx.31661.1.S1_at--757--9711Chr12:4923064..4923088 (25 bp)
TAAGTTCCTTTTCTCATGGGCCGAT
LOC_Os12g09390
OsAffx.31661.1.S1_at--996--791Chr12:4923079..4923103 (25 bp)
ATGGGCCGATTCACATGAGCCAACC
LOC_Os12g09390
OsAffx.31661.1.S1_at--61--10151Chr12:4923124..4923148 (25 bp)
TATACCTACCCCTCAAAACACAGTA
LOC_Os12g09390
OsAffx.31661.1.S1_at--937--6891Chr12:4923146..4923170 (25 bp)
GTATCAGTACTGGATCTTCCCATGG
LOC_Os12g09390
OsAffx.31661.1.S1_at--25--10291Chr12:4923412..4923436 (25 bp)
TTTGCCTCTGGAACTTAACGATCCT
LOC_Os12g09390
OsAffx.31661.1.S1_at--269--9811Chr12:4923427..4923451 (25 bp)
TAACGATCCTAATGCTTCAGATGAT
LOC_Os12g09390
OsAffx.31661.1.S1_at--1160--4031Chr12:4923472..4923496 (25 bp)
CGATTGTTCTATACGGCTCCTTCAA
LOC_Os12g09390
OsAffx.31661.1.S1_at--100--8332Chr12:4923486..4923510 (25 bp)
GGCTCCTTCAACAGATTGGCACTGA
LOC_Os12g09390
OsAffx.31661.1.S1_at--499--8591Chr12:4923534..4923558 (25 bp)
TGGTATCTGCCAAAGCCTTGACTGC
LOC_Os12g09390
Target Sequence 
CAGCACGTACTGGAGGAGACCTCTGGTGAACTTATTCCTTTCCAAGTCAAATTATTATCCTTCACCTAAGTTCCTTTTCT
CATGGGCCGATTCACATGAGCCAACCCTTCTCAAACCGAAGTCCAATATACCTACCCCTCAAAACACAGTATCAGTACTG
GATCTTCCCATGGACCCATTCCAACAAAATGTCTCTCCTGCTTTACCCCCAAAGCCCAAAAGGAGGGCTGGGAAGGTGAT
CTTGATGGATTTAGAAAGGAGGAGAAGTGCAAGTATCAACAAACTTTCTGATGGATTTATGTCCCCTGATCCAAACTTGG
GTGTGGGAAAGCCAAGGGGAAAGGATAGGGCAAAGAGTACCAAGAAGCTTAAAATGTTGGCTCAAGAAAGTGGTATCTTA
CTCTCTCTTAACCCTTTGCCTCTGGAACTTAACGATCCTAATGCTTCAGATGATGAGATTGATGCCCCTCTCGCCGATTG
TTCTATACGGCTCCTTCAACAGATTGGCACTGAGGTCTGTGGGATGAACAGGGAGATGGTATCTGCCAAAGCCTTGACTG
C

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31661.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis