Browse Element(s) Details


OsAffx.31676.1.S1_at

Description tigr:9640.m00951
TID=OsAffx.31676.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=O-methyltransferase, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1014011/11O-methyltransferase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g10090OsAffx.19542.3.S1_x_at7/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10090OsAffx.21754.1.S1_x_at1/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10090OsAffx.9949.1.S1_at1/1112+5338918..5342704retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10100OsAffx.32051.1.S1_x_at1/1112+5346839..5347288hypothetical protein
LOC_Os12g10110OsAffx.17420.1.S1_at1/1112+5348232..5349218retrotransposon protein, putative, unclassified
LOC_Os12g10120OsAffx.32051.1.S1_x_at1/1112+5355356..5355805hypothetical protein
LOC_Os12g10130NANA12+5356646..5358682retrotransposon protein, putative, Ty1-copia subclass
LOC_Os12g10140OsAffx.31676.1.S1_at11/1112+5363419..5364800O-methyltransferase family protein
LOC_Os12g10150NANA12+5368912..5369148hypothetical protein
LOC_Os12g10160NANA12+5370262..5371146hypothetical protein
LOC_Os12g10170OsAffx.19584.1.S1_at11/1112+5373910..5374727O-methyltransferase family protein, expressed
LOC_Os12g10180OsAffx.19585.1.S1_at11/1112+5375855..5382028NB-ARC domain containing protein, expressed
LOC_Os12g10190Os.49409.1.S1_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190Os.49409.1.S1_s_at11/1112+5386776..5390689transposon protein, putative, unclassified, expressed
LOC_Os12g10190OsAffx.19586.1.S1_at2/1112+5386776..5390689transposon protein, putative, unclassified, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009809biological_processlignin biosynthesis
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005829cellular_componentcytosol
GO:0047763molecular_functioncaffeate O-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31676.1.S1_at--809--8931Chr12:5363579..5363603 (25 bp)
TGACCGCGGATGAGCTTGCCGAGAA
LOC_Os12g10140
OsAffx.31676.1.S1_at--849--9971Chr12:5363659..5363683 (25 bp)
TACCTCGCATCCTTCGATGTGGTGA
LOC_Os12g10140
OsAffx.31676.1.S1_at--890--7491Chr12:5363677..5363701 (25 bp)
GTGGTGAGGTGCTCCACCGAGACAA
LOC_Os12g10140
OsAffx.31676.1.S1_at--794--4311Chr12:5363789..5363813 (25 bp)
CCTTCACTGTGTTCGTTGTCGACGA
LOC_Os12g10140
OsAffx.31676.1.S1_at--1087--2071Chr12:5364027..5364051 (25 bp)
ACATATAGCGGCAGCGGTGACTAGT
LOC_Os12g10140
OsAffx.31676.1.S1_at--682--9371Chr12:5364068..5364092 (25 bp)
TCGAGAGGGCACACGGGTTGCTCTA
LOC_Os12g10140
OsAffx.31676.1.S1_at--502--7671Chr12:5364082..5364106 (25 bp)
GGGTTGCTCTACTTCGAGTACATGG
LOC_Os12g10140
OsAffx.31676.1.S1_at--295--4431Chr12:5364142..5364166 (25 bp)
GCCATGGCGCAGCATTCAGTGATTC
LOC_Os12g10140
OsAffx.31676.1.S1_at--961--6571Chr12:5364162..5364186 (25 bp)
GATTCTGGTCAGCAAGATGCTCGAA
LOC_Os12g10140
OsAffx.31676.1.S1_at--964--5431Chr12:5364184..5364208 (25 bp)
GAACGCTTCCAAGGATTCGACGGCG
LOC_Os12g10140
OsAffx.31676.1.S1_at--183--9671Chr12:5364260..5364284 (25 bp)
TCACCTCGCGGTACAAGCACATTAG
LOC_Os12g10140
Target Sequence 
TGACCGCGGATGAGCTTGCCGAGAAAATCCAGGCCACGGACAAGGCCGAGGTGGCCGTCTCGGTGGATCGGATTCTCCGG
TACCTCGCATCCTTCGATGTGGTGAGGTGCTCCACCGAGACAAGCCCCGACGGCGCACTTCTCCGGCGCTACATGCCAGC
GCCGGTGTGCCGGTGGCTCACCAGAAACAACGGCGAGGGATCGCTGGCTCCCTTCACTGTGTTCGTTGTCGACGAGGACC
ACCTATTGCCCTGGCAACATATAGCGGCAGCGGTGACTAGTGGCGGGCCGGCGCCGTTCGAGAGGGCACACGGGTTGCTC
TACTTCGAGTACATGGGGAAGAACCAGCGGCTGGGCGCGCTGTTCGACCACGCCATGGCGCAGCATTCAGTGATTCTGGT
CAGCAAGATGCTCGAACGCTTCCAAGGATTCGACGGCGTCCAGCAGCTCGTCGATGTCGGTGGGGGTGACGGATCCACCC
TGGGGATGATCACCTCGCGGTACAAGCACATTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31676.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis