Browse Element(s) Details


OsAffx.31708.1.S1_at

Description tigr:9640.m01155
TID=OsAffx.31708.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g121109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g12080Os.40001.1.A1_at9/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.16205.1.S1_at2/1112+6609704..6623597expressed protein
LOC_Os12g12080OsAffx.512.1.S1_x_at1/1112+6609704..6623597expressed protein
LOC_Os12g12090Os.4921.1.S1_at11/1112+6624346..6624930expressed protein
LOC_Os12g12100NANA12+6627865..6628454transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g12110OsAffx.31708.1.S1_at9/1112+6639548..6642074hypothetical protein
LOC_Os12g12120OsAffx.31705.2.S1_at4/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12120OsAffx.27330.1.S1_s_at1/1112+6646336..6649272Leucine Rich Repeat family protein, expressed
LOC_Os12g12130Os.28949.1.S1_at11/1112+6649801..6653129Leucine Rich Repeat family protein, expressed
LOC_Os12g12140NANA12+6656329..6656604hypothetical protein
LOC_Os12g12150NANA12+6660198..6663421transposon protein, putative, unclassified
LOC_Os12g12160NANA12+6664052..6670208transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31708.1.S1_at--685--3491Chr12:6639589..6639613 (25 bp)
CATGGGTGTCGTCCGCGAGCACTCT
LOC_Os12g12110
OsAffx.31708.1.S1_at--852--9411Chr12:6639597..6639621 (25 bp)
TCGTCCGCGAGCACTCTGGTGACAA
LOC_Os12g12110
OsAffx.31708.1.S1_at--1100--91NONE
ATTCTCCAATTCACGTGCACTCGAG
NONE
OsAffx.31708.1.S1_at--120--3191NONE
CAATTCACGTGCACTCGAGTTGAGA
NONE
OsAffx.31708.1.S1_at--265--1991Chr12:6641136..6641160 (25 bp)
ACTCGAGTTGAGAAGAAAGCATGCT
LOC_Os12g12110
OsAffx.31708.1.S1_at--570--10171Chr12:6641160..6641184 (25 bp)
TATAGAGAGGTACGCCTCCCCCATT
LOC_Os12g12110
OsAffx.31708.1.S1_at--1004--8191Chr12:6641964..6641984 (21 bp)
GGAAGATAGGACCACATACTTATTG
LOC_Os12g12110
OsAffx.31708.1.S1_at--531--331Chr12:6641975..6641999 (25 bp)
ATACTTATTGTTGACGTTGCTCTCA
LOC_Os12g12110
OsAffx.31708.1.S1_at--174--10771Chr12:6641985..6642009 (25 bp)
TTGACGTTGCTCTCAACTCCTGATG
LOC_Os12g12110
OsAffx.31708.1.S1_at--663--9091Chr12:6641992..6642016 (25 bp)
TGCTCTCAACTCCTGATGGACAGAA
LOC_Os12g12110
OsAffx.31708.1.S1_at--461--1311Chr12:6642020..6642044 (25 bp)
AGATGTTAGTGATGACTACTCCTCG
LOC_Os12g12110
Target Sequence 
CATGGGTGTCGTCCGCGAGCACTCTGGTGACAACCGCGATTGCGCCGAGCAGGTCGCCTTCAACCCGTCCCACAAGAAGC
CCGACGACCAGCAGCAACAAAGCTACAACATCACCCAATTCTCCAATTCACGTGCACTCGAGTTGAGAAGAAAGCATGCT
ATAGAGAGGTACGCCTCCCCCATTGCCGAGCAGAAGGAAGATAGGACCACATACTTATTGTTGACGTTGCTCTCAACTCC
TGATGGACAGAAGAGAGATGTTAGTGATGACTACTCCTCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31708.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis