Browse Element(s) Details


OsAffx.31760.1.S1_at

Description tigr:9640.m01575
TID=OsAffx.31760.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1617011/11hypothetical protein
LOC_Os08g228101/11retrotransposon protein, putative, unclassified
LOC_Os11g187901/11transposon protein, putative, unclassified
LOC_Os12g153401/11retrotransposon protein, putative, LINE subclass
LOC_Os07g222801/11retrotransposon, putative, centromere-specific
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16140Os.31845.1.S1_x_at1/1112+9214216..9217417hypothetical protein
LOC_Os12g16150OsAffx.22699.1.S1_x_at2/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150OsAffx.8279.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150Os.52731.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16160OsAffx.31759.1.S1_at10/1112+9227564..9228751CCT motif family protein
LOC_Os12g16170OsAffx.31760.1.S1_at11/1112+9234378..9235199hypothetical protein
LOC_Os12g16180Os.52925.1.S1_at11/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16180Os.4506.3.S1_x_at1/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16190OsAffx.19700.1.S1_at11/1112+9252367..9253584hypothetical protein
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31760.1.S1_at--671--9971Chr12:9234416..9234440 (25 bp)
TACCTGCCTCGCTGTGCAAGAGTTC
LOC_Os12g16170
OsAffx.31760.1.S1_at--613--3871Chr12:9234427..9234451 (25 bp)
CTGTGCAAGAGTTCCACTTCCAGGA
LOC_Os12g16170
OsAffx.31760.1.S1_at--905--6051Chr12:9234435..9234459 (25 bp)
GAGTTCCACTTCCAGGAAGCATGTT
LOC_Os12g16170
OsAffx.31760.1.S1_at--194--2711Chr12:9234451..9234475 (25 bp)
AAGCATGTTCTGGTGGTCTGACAAC
LOC_Os12g16170
OsAffx.31760.1.S1_at--445--9471Chr12:9234459..9234483 (25 bp)
TCTGGTGGTCTGACAACTAAGCAGG
LOC_Os12g16170
OsAffx.31760.1.S1_at--23--9411Chr12:9234515..9234539 (25 bp)
TCGTCATGGGACGAAGATGGCTGAT
LOC_Os12g16170
OsAffx.31760.1.S1_at--334--101372Chr12:12954509..12954530 (22 bp)
TTAGGTCCCGATCTTCCGATAGTTT
NONE
OsAffx.31760.1.S1_at--530--10631Chr12:9234559..9235036 (25 bp)
TTCCGATAGTTTCCCGGCAACTTAG
LOC_Os12g16170
OsAffx.31760.1.S1_at--987--4232Chr12:9235025..9235049 (25 bp)
CCGGCAACTTAGTAGGAATTTTGAT
LOC_Os12g16170
OsAffx.31760.1.S1_at--567--10171Chr12:9235044..9235068 (25 bp)
TTTGATGTGGAACCAAATCCATCAG
LOC_Os12g16170
OsAffx.31760.1.S1_at--711--4191Chr12:9235109..9235133 (25 bp)
CCTGAAATTCCTTCTAGAACAGCGG
LOC_Os12g16170
Target Sequence 
TACCTGCCTCGCTGTGCAAGAGTTCCACTTCCAGGAAGCATGTTCTGGTGGTCTGACAACTAAGCAGGGGGAACGAGGGC
AGCACGATGACAGAGGTGGTCGTCATGGGACGAAGATGGCTGATGAGGAGTTAGGTCCCGATCTTCCGATAGTTTCCCGG
CAACTTAGTAGGAATTTTGATGTGGAACCAAATCCATCAGAAAGTAGACTCCATAAGCTTTCCAACAAGTACTCATGGGC
CCTGAAATTCCTTCTAGAACAGCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31760.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis