Browse Element(s) Details


Os.52925.1.S1_at

Description gb:AK069945.1
DB_XREF= gi:32979969
TID=Os.52925.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52925 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023036E17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023036E17, full insert sequence.
FL= gb:AK069945.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1618011/11Phospholipase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16150OsAffx.22699.1.S1_x_at2/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150OsAffx.8279.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16150Os.52731.1.S1_at1/1112+9217754..9224440retrotransposon protein, putative, unclassified
LOC_Os12g16160OsAffx.31759.1.S1_at10/1112+9227564..9228751CCT motif family protein
LOC_Os12g16170OsAffx.31760.1.S1_at11/1112+9234378..9235199hypothetical protein
LOC_Os12g16180Os.52925.1.S1_at11/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16180Os.4506.3.S1_x_at1/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16190OsAffx.19700.1.S1_at11/1112+9252367..9253584hypothetical protein
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16210Os.54139.1.S1_at11/1112+9271502..9274409DHHC zinc finger domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003824molecular_functioncatalytic activity
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52925.1.S1_at--795--4451Chr12:9246698..9246722 (25 bp)
GCCTCGTCCCATTGTGATAACAATC
LOC_Os12g16180
Os.52925.1.S1_at--566--5171Chr12:9246727..9246751 (25 bp)
GCAAGCTTAGCAACGTGATACCTAC
LOC_Os12g16180
Os.52925.1.S1_at--946--6291Chr12:9247445..9247469 (25 bp)
GATGATGCCGTCACAGATCCATCAG
LOC_Os12g16180
Os.52925.1.S1_at--69--5471Chr12:9247478..9247502 (25 bp)
GAACTGTATACATCAGCTCAGAGCA
LOC_Os12g16180
Os.52925.1.S1_at--200--1971Chr12:9247519..9247543 (25 bp)
ACTGTACCCAGGGATGTGTCACGCC
LOC_Os12g16180
Os.52925.1.S1_at--475--7451Chr12:9247534..9247558 (25 bp)
GTGTCACGCCCTGACATCTGGTGAG
LOC_Os12g16180
Os.52925.1.S1_at--878--7371Chr12:9247554..9247578 (25 bp)
GTGAGCCCGCAAGCAACATTGACAT
LOC_Os12g16180
Os.52925.1.S1_at--141--7851Chr12:9247661..9247685 (25 bp)
GGTACATATATAGTCTCAGCAGATT
LOC_Os12g16180
Os.52925.1.S1_at--826--5031Chr12:9247679..9247703 (25 bp)
GCAGATTGATGTAGTGTGAGGCCTC
LOC_Os12g16180
Os.52925.1.S1_at--340--7391Chr12:9247694..9247718 (25 bp)
GTGAGGCCTCACTTAGATGACGGAA
LOC_Os12g16180
Os.52925.1.S1_at--747--5791Chr12:9247752..9247776 (25 bp)
GACGCATAATTGTTCCAATGTCATT
LOC_Os12g16180
Target Sequence 
GCCTCGTCCCATTGTGATAACAATCCTAAGCAAGCTTAGCAACGTGATACCTACATGGAAAATTATTCCTACTGAAGATG
TCATTGATAAGGCAATTAAAAGCGAGGAGTGGCGTCAAGAGGTAAGAAACAATCCATATTGCTATAAAGGAAGGCCTAGG
TTAAAGACTGGTTATGAACTTTTTATGGCAAGCTTGGATATTGAAAGCACTCTTGACAAGGNTACACTACCATTCATCAT
TGTCCATGGNTGGTGATGATGCCGTCACAGATCCATCAGTNANNGAAGAACTGTATACATCAGCTCAGAGCAAGGACAAA
ACACTGAAACTGTACCCAGGGATGTGTCACGCCCTGACATCTGGTGAGCCCGCAAGCAACATTGACATTGTATTTTTGGA
CATCATTAAGTGGCTTGATGAGAGGGTATCAGTTTCATAATATGAGATCAGTTAACAATTGTAACCATTTGGTACATATA
TAGTCTCAGCAGATTGATGTAGTGTGAGGCCTCACTTAGATGACGGAAATTGGATACAACTTCATTTTCATTATGTCAAT
TGACGCATAATTGTTCCAATGTCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52925.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis