Browse Element(s) Details


Os.54139.1.S1_at

Description gb:AK102127.1
DB_XREF= gi:32987336
TID=Os.54139.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54139 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033084P13, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033084P13, full insert sequence.
FL= gb:AK102127.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1621011/11DHHC zinc finger domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16180Os.52925.1.S1_at11/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16180Os.4506.3.S1_x_at1/1112+9244029..9247791Phospholipase, putative, expressed
LOC_Os12g16190OsAffx.19700.1.S1_at11/1112+9252367..9253584hypothetical protein
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16210Os.54139.1.S1_at11/1112+9271502..9274409DHHC zinc finger domain containing protein, expressed
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16230NANA12+9282427..9282744hypothetical protein
LOC_Os12g16240Os.48109.1.A1_s_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.48109.1.A1_x_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.14533.1.S1_a_at3/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54139.1.S1_at--589--1631Chr12:9272048..9272072 (25 bp)
AGCGTGCCCGTGAGCGAATCAGGAA
LOC_Os12g16210
Os.54139.1.S1_at--898--6591Chr12:9271921..9271945 (25 bp)
GATTGTTCCTGTTTTCACCAAGAGC
LOC_Os12g16210
Os.54139.1.S1_at--901--2771Chr12:9271902..9271926 (25 bp)
AAGAGCTGGTTGTCAGGATCCCCGA
LOC_Os12g16210
Os.54139.1.S1_at--837--1391Chr12:9271857..9271881 (25 bp)
AGAAGACGATTCTCCGGTTCACCAT
LOC_Os12g16210
Os.54139.1.S1_at--754--5631Chr12:9271817..9271841 (25 bp)
GACACCGGAGCAACTTCGATCTGAG
LOC_Os12g16210
Os.54139.1.S1_at--459--1151Chr12:9271766..9271790 (25 bp)
AGTCCCACATCTCAAAGCAGGTTCT
LOC_Os12g16210
Os.54139.1.S1_at--664--1011Chr12:9271748..9271772 (25 bp)
AGGTTCTTTGCTCCGTTGTCATGAA
LOC_Os12g16210
Os.54139.1.S1_at--354--671Chr12:9271712..9271736 (25 bp)
ATGAAGATTCTCCATCCTGATGCGG
LOC_Os12g16210
Os.54139.1.S1_at--24--8851Chr12:9271695..9271719 (25 bp)
TGATGCGGGACGTTGTTTACTTCAA
LOC_Os12g16210
Os.54139.1.S1_at--274--3591Chr12:9271658..9271682 (25 bp)
CATTTTTGTGTCTCTCAATCTCTGA
LOC_Os12g16210
Os.54139.1.S1_at--391--2611Chr12:9271602..9271626 (25 bp)
AACCCTTTTCTCAGGTTCATTCATG
LOC_Os12g16210
Target Sequence 
AGCGTGCCCGTGAGCGAATCAGGAACAAGCTGCCATCAACAACAACCTCACCGATGAAACCATTACCGGTGGAGACAAAG
AGAGGTCCTCTGAACCAAGAGAGAAAGCACATCATGACAGGGAAGGAGATTGTTCCTGTTTTCACCAAGAGCTGGTTGTC
AGGATCCCCGACAGCAAGGCTGTCAAGCCCAAGAAGACGATTCTCCGGTTCACCATCTCCGAAACCACAGAGACACCGGA
GCAACTTCGATCTGAGACTTGCAGAGGTGTCAAGAGAGCTTGAGTCCCACATCTCAAAGCAGGTTCTTTGCTCCGTTGTC
ATGAAGGGTGTTGAAGATGAAGATTCTCCATCCTGATGCGGGACGTTGTTTACTTCAACAAGATTCATTTCATTTTTGTG
TCTCTCAATCTCTGAGAATTGTGTGATGTGCTTGCTTAGCCCATGCAACCCTTTTCTCAGGTTCATTCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54139.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis