Browse Element(s) Details


Os.17641.1.S1_at

Description gb:BI813264
DB_XREF= gi:16579169
DB_XREF=J009E06
CLONE=J009E06
TID=Os.17641.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.17641 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1622010/11Isoflavone reductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16190OsAffx.19700.1.S1_at11/1112+9252367..9253584hypothetical protein
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16210Os.54139.1.S1_at11/1112+9271502..9274409DHHC zinc finger domain containing protein, expressed
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16230NANA12+9282427..9282744hypothetical protein
LOC_Os12g16240Os.48109.1.A1_s_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.48109.1.A1_x_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.14533.1.S1_a_at3/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein
LOC_Os12g16270NANA12+9299418..9299704expressed protein
LOC_Os12g16280Os.52396.1.S1_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_s_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_at5/1112+9301941..9308507expressed protein
LOC_Os12g16280Os.17370.2.S1_x_at4/1112+9301941..9308507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.17641.1.S1_at--265--2711Chr12:9279007..9279032 (25 bp)
AAGCATTTTGGACTATGTTACGGTC
LOC_Os12g16220
Os.17641.1.S1_at--1010--5691Chr12:9278997..9279021 (25 bp)
GACTATGTTACGGTCTCCAAGATAT
LOC_Os12g16220
Os.17641.1.S1_at--57--6711Chr12:9278991..9279015 (25 bp)
GTTACGGTCTCCAAGATATTACTTT
LOC_Os12g16220
Os.17641.1.S1_at--922--7791Chr12:9278986..9279010 (25 bp)
GGTCTCCAAGATATTACTTTGATCA
LOC_Os12g16220
Os.17641.1.S1_at--910--2031Chr12:9278763..9278787 (25 bp)
ACTATGATGTGTTATCTTCGAGTAT
LOC_Os12g16220
Os.17641.1.S1_at--334--431Chr12:9278750..9278774 (25 bp)
ATCTTCGAGTATGAGGTTGGTTCTT
LOC_Os12g16220
Os.17641.1.S1_at--444--10112Chr05:14854555..14854581 (25 bp)
TATGAGGTTGGTTCTTTTGGACGGA
NONE
Os.17641.1.S1_at--621--6771NONE
GTTAGCTAAGTTGTTACTTCATTGC
NONE
Os.17641.1.S1_at--884--51Chr12:9278689..9278713 (25 bp)
ATTGCTTTAATTTTTAGGAGATGGC
LOC_Os12g16220
Os.17641.1.S1_at--1129--10431Chr12:9278676..9278700 (25 bp)
TTAGGAGATGGCTTGTCTTTTTCTC
LOC_Os12g16220
Os.17641.1.S1_at--526--3791Chr12:9278654..9278678 (25 bp)
CTCCTGAAAAGATAGATTTGTAGTT
LOC_Os12g16220
Target Sequence 
AAGCATTTTGGACTATGTTACGGTCTCCAAGATATTACTTTGATCAACAATATATATAAAAGTAAGATATAAAAGTAAGA
TGTTTTAAATAAAAAAAGTTGCATATTATGATAGTTATTTATTTATTTTATTAATGGTCAAAGTTAAAAATGTTTGACTT
GTCACTATGCTAAAAATGCTTTTATTTTGGGACAGAGGGAGTATATTTATTATACTAGTATGTCTAGATTTATTGAACTA
TGATGTGTTATCTTCGAGTATGAGGTTGGTTCTTTTGGACGGAGGGAGTAGTTAGCTAAGTTGTTACTTCATTGCTTTAA
TTTTTAGGAGATGGCTTGTCTTTTTCTCCTGAAAAGATAGATTTGTAGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.17641.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis