Browse Element(s) Details


Os.52396.1.S1_at

Description gb:AK066839.1
DB_XREF= gi:32976857
TID=Os.52396.1
CNT=6
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.52396 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013088I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013088I10, full insert sequence.
FL= gb:AK066839.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1628011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16230NANA12+9282427..9282744hypothetical protein
LOC_Os12g16240Os.48109.1.A1_s_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.48109.1.A1_x_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.14533.1.S1_a_at3/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein
LOC_Os12g16270NANA12+9299418..9299704expressed protein
LOC_Os12g16280Os.52396.1.S1_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_s_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_at5/1112+9301941..9308507expressed protein
LOC_Os12g16280Os.17370.2.S1_x_at4/1112+9301941..9308507expressed protein
LOC_Os12g16290Os.12021.1.S1_at11/1112+9312637..9315528Isoflavone reductase homolog, putative, expressed
LOC_Os12g16300OsAffx.31763.1.S1_at11/1112+9319553..9319925hypothetical protein
LOC_Os12g16310OsAffx.26046.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310Os.52323.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16310OsAffx.20940.1.S1_at1/1112+9322573..9325245Transposable element protein, putative, Retrotrans_gag
LOC_Os12g16320OsAffx.24242.2.S1_at3/1112+9330425..9332427hypothetical protein
LOC_Os12g16320Os.31929.11.S1_x_at1/1112+9330425..9332427hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52396.1.S1_at--524--6771Chr12:9302516..9302540 (25 bp)
GTTAGAGTCAATTTCGACTCGTGAT
LOC_Os12g16280
Os.52396.1.S1_at--923--7071Chr12:9302510..9302534 (25 bp)
GTCAATTTCGACTCGTGATTTGTCC
LOC_Os12g16280
Os.52396.1.S1_at--597--191Chr12:9302506..9302530 (25 bp)
ATTTCGACTCGTGATTTGTCCTCTA
LOC_Os12g16280
Os.52396.1.S1_at--808--10631Chr12:9302504..9302528 (25 bp)
TTCGACTCGTGATTTGTCCTCTATA
LOC_Os12g16280
Os.52396.1.S1_at--951--4091Chr12:9302502..9302526 (25 bp)
CGACTCGTGATTTGTCCTCTATAGT
LOC_Os12g16280
Os.52396.1.S1_at--155--2011Chr12:9302500..9302524 (25 bp)
ACTCGTGATTTGTCCTCTATAGTCG
LOC_Os12g16280
Os.52396.1.S1_at--1147--9411Chr12:9302498..9302522 (25 bp)
TCGTGATTTGTCCTCTATAGTCGTC
LOC_Os12g16280
Os.52396.1.S1_at--442--8831Chr12:9302495..9302519 (25 bp)
TGATTTGTCCTCTATAGTCGTCGTT
LOC_Os12g16280
Os.52396.1.S1_at--603--211Chr12:9302493..9302517 (25 bp)
ATTTGTCCTCTATAGTCGTCGTTTG
LOC_Os12g16280
Os.52396.1.S1_at--814--10811Chr12:9302491..9302515 (25 bp)
TTGTCCTCTATAGTCGTCGTTTGGA
LOC_Os12g16280
Os.52396.1.S1_at--1072--8691Chr12:9302490..9302514 (25 bp)
TGTCCTCTATAGTCGTCGTTTGGAA
LOC_Os12g16280
Target Sequence 
GTTAGAGTCAATTTCGACTCGTGATTTGTCCTCTATAGTCGTCGTTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52396.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis