Browse Element(s) Details


Os.48109.1.A1_x_at

Description gb:BQ907271
DB_XREF= gi:22306049
DB_XREF=P003D03
CLONE=P003D03
TID=Os.48109.1
CNT=5
FEA=EST
TIER=ConsEnd
STK=0
UG=Os.48109 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_193102.1 (A.thaliana) isoflavone reductase-like protein (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1624011/11Isoflavone reductase homolog, putative, expressed
LOC_Os12g162604/11hypothetical protein
LOC_Os12g162202/11Isoflavone reductase homolog, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g16200Os.7101.1.S1_at11/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200OsAffx.10222.1.S1_x_at2/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16200Os.51841.1.S1_x_at1/1112+9260060..9267515glutathione synthetase, putative, expressed
LOC_Os12g16210Os.54139.1.S1_at11/1112+9271502..9274409DHHC zinc finger domain containing protein, expressed
LOC_Os12g16220Os.17641.1.S1_at10/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_x_at2/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.14533.1.S1_a_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16220Os.48109.1.A1_s_at1/1112+9275597..9280931Isoflavone reductase homolog, putative, expressed
LOC_Os12g16230NANA12+9282427..9282744hypothetical protein
LOC_Os12g16240Os.48109.1.A1_s_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.48109.1.A1_x_at11/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16240Os.14533.1.S1_a_at3/1112+9284103..9286535Isoflavone reductase homolog, putative, expressed
LOC_Os12g16250NANA12+9288203..9288850Isoflavone reductase homolog, putative, expressed
LOC_Os12g16260OsAffx.31762.1.S1_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_s_at11/1112+9295415..9297587hypothetical protein
LOC_Os12g16260Os.48109.1.A1_x_at4/1112+9295415..9297587hypothetical protein
LOC_Os12g16270NANA12+9299418..9299704expressed protein
LOC_Os12g16280Os.52396.1.S1_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_s_at11/1112+9301941..9308507expressed protein
LOC_Os12g16280OsAffx.19701.1.S1_at5/1112+9301941..9308507expressed protein
LOC_Os12g16280Os.17370.2.S1_x_at4/1112+9301941..9308507expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0006979biological_processresponse to oxidative stress
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.48109.1.A1_x_at--1051--1371Chr12:9284828..9284852 (25 bp)
AGACCACAGGATAATTGCCTCACTC
LOC_Os12g16240
Os.48109.1.A1_x_at--977--5851Chr12:9284827..9284851 (25 bp)
GACCACAGGATAATTGCCTCACTCA
LOC_Os12g16240
Os.48109.1.A1_x_at--636--1711Chr12:9284826..9284850 (25 bp)
ACCACAGGATAATTGCCTCACTCAG
LOC_Os12g16240
Os.48109.1.A1_x_at--316--4371Chr12:9284825..9284849 (25 bp)
CCACAGGATAATTGCCTCACTCAGA
LOC_Os12g16240
Os.48109.1.A1_x_at--123--3191Chr12:9284463..9284743 (25 bp)
CAATGAAAGATACAGATTTTGCTCA
LOC_Os12g16240
Os.48109.1.A1_x_at--89--172Chr12:9297225..9297249 (25 bp)
ATTTTGCTCATCAAGTGGGAGTAAC
LOC_Os12g16260
Os.48109.1.A1_x_at--614--7652Chr12:9297209..9297233 (25 bp)
GGGAGTAACACATTTCTACCACATT
LOC_Os12g16260
Os.48109.1.A1_x_at--353--2193Chr12:9297202..9297226 (25 bp)
ACACATTTCTACCACATTTTCTACG
LOC_Os12g16260
Os.48109.1.A1_x_at--806--3312Chr12:9297190..9297214 (25 bp)
CACATTTTCTACGAAGGTTGCTTAA
LOC_Os12g16260
Os.48109.1.A1_x_at--939--4092Chr12:9284381..9284405 (25 bp)
CGACATTGGTGACAATGGAGCCGAA
LOC_Os12g16240
Os.48109.1.A1_x_at--973--8491Chr12:9284245..9284269 (25 bp)
TGGCAGCTTGCTTCACTAAGTCAAA
LOC_Os12g16240
Target Sequence 
AGACCACAGGATAATTGCCTCACTCAGANACGAGCTGATCGCNATGTGGGAAAAACTCTCTGGAAAAAGTCTTACCNAAT
TCCACATACNCGGTGATGAATTTTTGGCTTCAATGAAAGATACAGATTTTGCTCATCAAGTGGGAGTAACACATTTCTAC
CACATTTTCTACGAAGGTTGCTTAACAAACTTCGACATTGGTGACAATGGAGCCGAAGCAACTCTGCTCTACCCAGATGT
TCAGTACACCCGCATTAATGAAGTTCTAAAACGCTATCTGTAACGGAGTATATGAAAATTTTATAAATATTTATGTTGGT
TTACGGTTTGGCAGCTTGCTTCACTAAGTCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.48109.1.A1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis