Browse Element(s) Details


OsAffx.31761.1.S1_at

Description gb:NM_188487.1
DB_XREF= gi:34904057
GEN=P0489G09.17
TID=OsAffx.31761.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0489G09.17 (P0489G09.17), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g277201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g27690NANA6+15678536..15680957retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27700OsAffx.15648.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27700OsAffx.6300.1.S1_at1/116+15682978..15686666Zinc knuckle family protein
LOC_Os06g27710NANA6+15687316..15688566hypothetical protein
LOC_Os06g27720OsAffx.9996.1.S1_x_at3/116+15694778..15701915retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720OsAffx.23450.1.S1_at1/116+15694778..15701915retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720OsAffx.21269.1.S1_x_at1/116+15694778..15701915retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27720OsAffx.31761.1.S1_at1/116+15694778..15701915retrotransposon protein, putative, Ty1-copia subclass
LOC_Os06g27730NANA6+15703878..15705912retrotransposon protein, putative, unclassified
LOC_Os06g27740OsAffx.4378.1.S1_x_at2/116+15708167..15714161retrotransposon protein, putative, unclassified
LOC_Os06g27740Os.20851.1.A1_x_at2/116+15708167..15714161retrotransposon protein, putative, unclassified
LOC_Os06g27740OsAffx.25778.2.S1_at1/116+15708167..15714161retrotransposon protein, putative, unclassified
LOC_Os06g27740OsAffx.15695.1.S1_x_at1/116+15708167..15714161retrotransposon protein, putative, unclassified
LOC_Os06g27750NANA6+15716182..15717302retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g27760Os.36369.1.S1_at11/116+15717526..15720269Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27760Os.57412.1.S1_at10/116+15717526..15720269Peptide methionine sulfoxide reductase msrB, putative, expressed
LOC_Os06g27770Os.15988.1.S1_at11/116+15723708..15726432Isoflavone reductase homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31761.1.S1_at--105--6631Chr01:6535366..6535390 (25 bp)
GTTGTGTTTTCAGTTGGTAGCCGAT
NONE
OsAffx.31761.1.S1_at--313--6611Chr01:6535378..6535402 (25 bp)
GTTGGTAGCCGATGTACCTGTCGAC
NONE
OsAffx.31761.1.S1_at--725--751Chr01:6535389..6535413 (25 bp)
ATGTACCTGTCGACAGTGATGCGCC
NONE
OsAffx.31761.1.S1_at--327--3891Chr01:6535395..6535419 (25 bp)
CTGTCGACAGTGATGCGCCTGTGGT
NONE
OsAffx.31761.1.S1_at--626--10071Chr01:6535477..6535501 (25 bp)
TAGGGTTTACGTGCGCGTGCATTAT
NONE
OsAffx.31761.1.S1_at--962--9932Chr01:6535484..6535508 (25 bp)
TACGTGCGCGTGCATTATGAGTGTC
NONE
OsAffx.31761.1.S1_at--1123--4931Chr01:6535495..6535869 (25 bp)
GCATTATGAGTGTCTGCGAGGCATC
NONE
OsAffx.31761.1.S1_at--830--8891Chr01:6535501..6535875 (25 bp)
TGAGTGTCTGCGAGGCATCACGCGT
NONE
OsAffx.31761.1.S1_at--36--391Chr01:6536059..6536083 (25 bp)
ATCACTGTCGGGTGCTGCGCCATGG
NONE
OsAffx.31761.1.S1_at--328--3892Chr01:6536063..6536087 (25 bp)
CTGTCGGGTGCTGCGCCATGGACAT
NONE
OsAffx.31761.1.S1_at--678--1691Chr01:6536290..6536314 (25 bp)
AGCCATGCGCTGTCACCGATGAACA
NONE
Target Sequence 
GTTGTGTTTTCAGTTGGTAGCCGATGTACCTGTCGACAGTGATGCGCCTGTGGTGACTTCGTCAATTTCTCCAGGATTTG
CCGGCCCAGTCTTCGAAGATGCTCATACGGGTAGGGTTTACGTGCGCGTGCATTATGAGTGTCTGCGAGGCATCACGCGT
GGCGGCGCCGTGCGGGAGGTGCTGCTCACGCGGTGGGAGGGGCGGGACGACCAGGTGCTGGTGTACGGTCTCCTCCTAGC
AGGGGTGGACCACGGCGAGCTCATGGGCAGAGCGCGGTTCTGCCTATGCCCGACCGGCGACGACGAGGGCGCGGCCGCGG
CGAGCCGCCGCGTCGTGGAGGCCATCACTGTCGGGTGCTGCGCCATGGACATCACCGTCTCCTTCCTGCGCCGCCGTCGC
CGAGCCCCGTGCCGTGCCACCGGGTTCGCCTCCATCTCCTCTTGCCAACGCCGACGCTCGTCGCGGCAGCCATGCGCTGT
CACCGATGAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31761.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis