Browse Element(s) Details


OsAffx.31773.1.S1_at

Description tigr:9640.m01689
TID=OsAffx.31773.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g1725011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g17210NANA12+9846236..9848222retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os12g17220NANA12+9849894..9852835retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17230OsAffx.31772.1.S1_at11/1112+9862214..9864857hypothetical protein
LOC_Os12g17240NANA12+9868471..9868994transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17250OsAffx.31773.1.S1_at11/1112+9872917..9873833hypothetical protein
LOC_Os12g17260Os.46314.2.S1_x_at4/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.10731.2.A1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260Os.47114.1.S1_x_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17260OsAffx.32036.1.S1_at1/1112+9876763..9879991transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17270OsAffx.22896.1.S1_x_at1/1112+9880827..9883129transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g17280OsAffx.7618.1.S1_at11/1112+9883807..9884187hypothetical protein
LOC_Os12g17290Os.47463.1.S1_x_at4/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17290Os.14491.2.S1_x_at3/1112+9885525..9898148retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g17300OsAffx.21897.5.S1_x_at4/1112+9898465..9901422retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31773.1.S1_at--909--571Chr12:9873770..9873794 (25 bp)
ATCCACCAGAGTGCGCTCCGGACGT
LOC_Os12g17250
OsAffx.31773.1.S1_at--843--3791Chr12:9873679..9873703 (25 bp)
CTCCCCTGGTGCTTTACGTAACAAG
LOC_Os12g17250
OsAffx.31773.1.S1_at--292--7151Chr12:9873671..9873695 (25 bp)
GTGCTTTACGTAACAAGGCTAGGTA
LOC_Os12g17250
OsAffx.31773.1.S1_at--74--291Chr12:9873661..9873680 (20 bp)
AGGCTAGGTAGGCAGCAAACCCTCC
LOC_Os12g17250
OsAffx.31773.1.S1_at--303--7851Chr12:9873207..9873674 (25 bp)
GGTAGGCAGCAAACCCTCCGCGAGT
LOC_Os12g17250
OsAffx.31773.1.S1_at--713--551Chr12:9873082..9873106 (25 bp)
ATCCGCGGCGGCTAGGGCATCGTCC
LOC_Os12g17250
OsAffx.31773.1.S1_at--329--4971Chr12:9873066..9873090 (25 bp)
GCATCGTCCAGCGACGCGGAGATTC
LOC_Os12g17250
OsAffx.31773.1.S1_at--288--4611Chr12:9873056..9873080 (25 bp)
GCGACGCGGAGATTCACGGGATCTT
LOC_Os12g17250
OsAffx.31773.1.S1_at--1034--1251Chr12:9873047..9873071 (25 bp)
AGATTCACGGGATCTTCCTCTGGTG
LOC_Os12g17250
OsAffx.31773.1.S1_at--1122--4151Chr12:9872972..9872996 (25 bp)
CGCCGTCGAAGCTCTGTGACGTCGA
LOC_Os12g17250
OsAffx.31773.1.S1_at--534--9471Chr12:9872960..9872984 (25 bp)
TCTGTGACGTCGACAGAGCCGCCAC
LOC_Os12g17250
Target Sequence 
ATCCACCAGAGTGCGCTCCGGACGTCGGCGGCAGTGGCGAAGCTGTCGGGGGTGCCGGAGGGGGCCAACACCCCCCTATC
CGACACTCCCCCTCCCCTGGTGCTTTACGTAACAAGGCTAGGTAGGCAGCAAACCCTCCGCGAGTCCGCGACAGCCGCGG
ACAGCGCCGCCTCGGCCTCGGCGAGGAACGCGGGGACGGCAGCCTCGCGGGCATCGAGCGCCGCGAGGGATTCGGAGGTG
GAGGCATCCGCGGCGGCTAGGGCATCGTCCAGCGACGCGGAGATTCACGGGATCTTCCTCTGGTGCCCCGGCCGCGGGCG
AGGCCGACACAGCCACAGCCGCAGCCAGAACACGACGCCGTCGAAGCTCTGTGACGTCGACAGAGCCGCCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31773.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis