Browse Element(s) Details


OsAffx.31811.2.S1_x_at

Description tigr:9633.m01430
TID=OsAffx.31811.2
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Zinc knuckle, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1608011/11Zinc knuckle family protein
LOC_Os12g173901/11Zinc knuckle family protein
LOC_Os12g195801/11hypothetical protein
LOC_Os04g339101/11hypothetical protein
LOC_Os08g210601/11Zinc knuckle family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein
LOC_Os05g16060OsAffx.14719.1.S1_at11/115+9043030..9046088hypothetical protein
LOC_Os05g16070OsAffx.14719.1.S1_at1/115+9051033..9054539hypothetical protein
LOC_Os05g16080OsAffx.31811.2.S1_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.2.S1_x_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.11549.1.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.4.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080Os.31535.1.A1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.3.S1_x_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16090NANA5+9073431..9074016hypothetical protein
LOC_Os05g16100OsAffx.26918.1.S1_at10/115+9081715..9083805hypothetical protein
LOC_Os05g16110OsAffx.26918.2.S1_at11/115+9087209..9088855hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31811.2.S1_x_at--813--771Chr05:9064365..9064389 (25 bp)
ATGTGCCTCATATTCAAGTTGACTT
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--390--2071Chr05:9064391..9064415 (25 bp)
ACTTGTGCTAACTCTTATTGCTCTC
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--688--1491Chr05:9064417..9064441 (25 bp)
AGCAAATATTTTTCCGAGCACTATA
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--288--3691Chr05:9064437..9064461 (25 bp)
CTATATGTGACCTGGATTATGTAGA
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--782--7951Chr05:9064468..9064492 (25 bp)
GGATAAGCGCATCGATCATGGACTT
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--1035--4971Chr05:9064476..9064500 (25 bp)
GCATCGATCATGGACTTGTTGGCAA
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--667--8513Chr12:11413976..11413999 (24 bp)
TGGCAATGCTCAACCTTCTCAAGAT
LOC_Os12g19580
OsAffx.31811.2.S1_x_at--72--5971Chr05:9064547..9064571 (25 bp)
GAGAAGGGAACAACCGTAGCTTGCA
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--507--6133Chr08:12588852..12588876 (25 bp)
GAGGGACACTTTGCCTCAAGTTGTC
LOC_Os08g21060
OsAffx.31811.2.S1_x_at--58--2831Chr05:9064780..9064804 (25 bp)
AAGTTGTCCTCGCAAGATTGATGAT
LOC_Os05g16080
OsAffx.31811.2.S1_x_at--1071--6291Chr05:9064799..9064823 (25 bp)
GATGATGAAATCACACTTCCAACAA
LOC_Os05g16080
Target Sequence 
ATGTGCCTCATATTCAAGTTGACTTTACTTGTGCTAACTCTTATTGCTCTCAAGCAAATATTTTTCCGAGCACTATATGT
GACCTGGATTATGTAGAGAAAAAGGATAAGCGCATCGATCATGGACTTGTTGGCAATGCTCAACCTTCTCAAGATAACCG
TGAGAGCATGGTGAAGAAGCTTGAGAAGGGAACAACCGTAGCTTGCAACAAGTTCTATCAAGAAGATATCAAGTCCAACA
ACAAGATCAAGGGGCAAGATCAAAGGAAGAACAAAACTTCCATTACTTGCTTCAAGTGCAAGAAAATGGGACATCATGTG
AGAGATTGTCCTTGGAAGAAAGAGAAGAAGTTGAACAAGAATGAGGATCTTGCTCACAAGTTCTTCAAGTCCACCAAAGA
GGGACACTTTGCCTCAAGTTGTCCTCGCAAGATTGATGATGAAATCACACTTCCAACAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31811.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis