Browse Element(s) Details


OsAffx.31843.1.S1_at

Description tigr:9640.m02202
TID=OsAffx.31843.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2321011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g23150OsAffx.7670.1.S1_at6/1112+13092756..13093942P-nitrophenylphosphatase, putative, expressed
LOC_Os12g23160OsAffx.31842.1.S1_at11/1112+13096187..13096750hypothetical protein
LOC_Os12g23170Os.4956.1.S1_at11/1112+13096990..13100112Glycosyl hydrolase family 1 protein, expressed
LOC_Os12g23180Os.46071.1.S1_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23180Os.46071.1.S1_x_at11/1112+13101008..13103633RNA binding protein, putative, expressed
LOC_Os12g23190Os.53270.1.S1_at9/1112+13108419..13111498tyrosine specific protein phosphatase family protein, putative, expressed
LOC_Os12g23200Os.51583.1.S1_at11/1112+13112478..13114689Photosystem I reaction center subunit XI, chloroplast precursor, putative, expressed
LOC_Os12g23210OsAffx.31843.1.S1_at11/1112+13117755..13118518hypothetical protein
LOC_Os12g23220NANA12+13127442..13130404retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23230NANA12+13130721..13136810retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g23240Os.47463.1.S1_x_at6/1112+13139236..13143924transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g23240Os.14491.2.S1_x_at4/1112+13139236..13143924transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31843.1.S1_at--920--4151Chr12:13118446..13118470 (25 bp)
CGCCGCTGTTGGTTTGACGCGAGTT
LOC_Os12g23210
OsAffx.31843.1.S1_at--638--10851Chr12:13118438..13118462 (25 bp)
TTGGTTTGACGCGAGTTTGTTGGAT
LOC_Os12g23210
OsAffx.31843.1.S1_at--229--1211Chr12:13118425..13118449 (25 bp)
AGTTTGTTGGATTGGCTCGGCTACA
LOC_Os12g23210
OsAffx.31843.1.S1_at--1080--8811Chr12:13118421..13118445 (25 bp)
TGTTGGATTGGCTCGGCTACAACTG
LOC_Os12g23210
OsAffx.31843.1.S1_at--485--3731Chr12:13118405..13118429 (25 bp)
CTACAACTGCGAGAGAGGTGGCACT
LOC_Os12g23210
OsAffx.31843.1.S1_at--409--7731Chr12:13118389..13118413 (25 bp)
GGTGGCACTGGCAACGATGCCGCCT
LOC_Os12g23210
OsAffx.31843.1.S1_at--931--5871Chr12:13118363..13118387 (25 bp)
GAGCGCCTCGCGGTGGGAGAACAAT
LOC_Os12g23210
OsAffx.31843.1.S1_at--623--5891Chr12:13118319..13118343 (25 bp)
GAGCTGTTGCGCTCGAAGACGAAGA
LOC_Os12g23210
OsAffx.31843.1.S1_at--11--4231Chr12:13118265..13118289 (25 bp)
CCGTTGTAGTTGAGGAAGACACCAT
LOC_Os12g23210
OsAffx.31843.1.S1_at--840--5631Chr12:13118248..13118272 (25 bp)
GACACCATTGGTGAGGCGGAGCTCA
LOC_Os12g23210
OsAffx.31843.1.S1_at--756--1511Chr12:13117813..13118214 (25 bp)
AGCAGATAAAGGTGGCGTGCCGCGA
LOC_Os12g23210
Target Sequence 
CGCCGCTGTTGGTTTGACGCGAGTTTGTTGGATTGGCTCGGCTACAACTGCGAGAGAGGTGGCACTGGCAACGATGCCGC
CTCGAGCGCCTCGCGGTGGGAGAACAATGGAGAGGTAGAGGTTGAGGGAGCTGTTGCGCTCGAAGACGAAGAGGATGAAG
TCGGAGGTAGGACCGAAGTTTCCGTTGTAGTTGAGGAAGACACCATTGGTGAGGCGGAGCTCAGAAGCGGGGTTATGAGA
CGGTGCGAGGGGAGGGAGCAGATAAAGGTGGCGTGCCGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31843.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis