Browse Element(s) Details


OsAffx.31868.1.S1_at

Description tigr:9640.m02374
TID=OsAffx.31868.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2491010/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g023002/11TPR Domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g24890OsAffx.21465.1.S1_x_at2/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.38172.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24890Os.43567.1.S1_x_at1/1112+14276434..14278017retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24900OsAffx.7693.1.S1_x_at11/1112+14279521..14279904hypothetical protein
LOC_Os12g24910OsAffx.31868.1.S1_at10/1112+14296913..14298753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24910OsAffx.7695.1.S1_at4/1112+14296913..14298753retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g24920OsAffx.15648.1.S1_at1/1112+14307348..14311873Transposable element protein, putative, Retrotrans_gag
LOC_Os12g24920OsAffx.5782.1.S1_at1/1112+14307348..14311873Transposable element protein, putative, Retrotrans_gag
LOC_Os12g24930NANA12+14316298..14318104retrotransposon protein, putative, unclassified
LOC_Os12g24940OsAffx.31869.1.S1_at5/1112+14321142..14321591retrotransposon protein, putative, unclassified
LOC_Os12g24950NANA12+14322247..14324951retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31868.1.S1_at--980--10611Chr12:14297008..14297032 (25 bp)
TTCGAGTGCAATTCAGAGCCCATGC
LOC_Os12g24910
OsAffx.31868.1.S1_at--461--7351Chr12:14297013..14297037 (25 bp)
GTGCAATTCAGAGCCCATGCAATTT
LOC_Os12g24910
OsAffx.31868.1.S1_at--941--3131Chr12:14297017..14297038 (22 bp)
AATTCAGAGCCCATGCAATTTGCAG
LOC_Os12g24910
OsAffx.31868.1.S1_at--950--111Chr12:14297018..14297038 (21 bp)
ATTCAGAGCCCATGCAATTTGCAGT
LOC_Os12g24910
OsAffx.31868.1.S1_at--1055--652Chr12:14297029..14297206 (25 bp)
ATGCAATTTGCAGTGGGTCAGTGTC
LOC_Os12g24910
OsAffx.31868.1.S1_at--948--5192Chr12:14297031..14297208 (25 bp)
GCAATTTGCAGTGGGTCAGTGTCAG
LOC_Os12g24910
OsAffx.31868.1.S1_at--1148--191NONE
ATTTGCAGTGGGTCAGTGTCAGAGA
NONE
OsAffx.31868.1.S1_at--571--2591Chr12:14297225..14297249 (25 bp)
AACGACGGTGTATTATGGTCACAAT
LOC_Os12g24910
OsAffx.31868.1.S1_at--795--5751Chr12:14297228..14297252 (25 bp)
GACGGTGTATTATGGTCACAATCAA
LOC_Os12g24910
OsAffx.31868.1.S1_at--1015--7731Chr12:14297231..14297255 (25 bp)
GGTGTATTATGGTCACAATCAATGG
LOC_Os12g24910
OsAffx.31868.1.S1_at--595--10431Chr12:14297237..14297261 (25 bp)
TTATGGTCACAATCAATGGTTCAGT
LOC_Os12g24910
Target Sequence 
TTCGAGTGCAATTCAGAGCCCATGCAATTTGCAGTGGGTCAGTGTCAGAGAGAAGAGCAACAACAACGACGGTGTATTAT
GGTCACAATCAATGGTTCAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31868.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis