Browse Element(s) Details


OsAffx.31869.5.S1_x_at

Description gb:NM_194816.1
DB_XREF= gi:37530991
TID=OsAffx.31869.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) putative polyprotein (OSJNBa0034A02.14), mRNA.
PROD=putative polyprotein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g0532011/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g279507/11retrotransposon protein, putative, unclassified
LOC_Os10g030207/11retrotransposon protein, putative, unclassified
LOC_Os05g257407/11retrotransposon protein, putative, unclassified
LOC_Os07g179207/11retrotransposon protein, putative, unclassified
LOC_Os08g117406/11retrotransposon protein, putative, unclassified
LOC_Os04g230806/11retrotransposon protein, putative, unclassified
LOC_Os02g279306/11retrotransposon protein, putative, unclassified
LOC_Os02g300006/11retrotransposon protein, putative, unclassified
LOC_Os12g224306/11retrotransposon protein, putative, unclassified
LOC_Os12g115906/11retrotransposon protein, putative, unclassified
LOC_Os12g224206/11retrotransposon protein, putative, unclassified
LOC_Os08g195706/11retrotransposon protein, putative, unclassified
LOC_Os05g173405/11retrotransposon protein, putative, unclassified
LOC_Os12g183105/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g105305/11retrotransposon protein, putative, unclassified
LOC_Os11g171805/11retrotransposon protein, putative, unclassified
LOC_Os05g204905/11retrotransposon protein, putative, unclassified
LOC_Os10g189705/11retrotransposon protein, putative, unclassified
LOC_Os05g445005/11retrotransposon protein, putative, unclassified
LOC_Os11g262705/11retrotransposon protein, putative, unclassified
LOC_Os01g267405/11retrotransposon protein, putative, unclassified
LOC_Os06g149905/11retrotransposon protein, putative, unclassified
LOC_Os08g195105/11retrotransposon protein, putative, unclassified
LOC_Os08g165105/11retrotransposon protein, putative, unclassified
LOC_Os04g078605/11retrotransposon protein, putative, unclassified
LOC_Os03g613704/11retrotransposon protein, putative, unclassified
LOC_Os10g062604/11retrotransposon protein, putative, unclassified
LOC_Os04g077304/11retrotransposon protein, putative, unclassified
LOC_Os07g192404/11retrotransposon protein, putative, unclassified
LOC_Os07g130004/11retrotransposon protein, putative, unclassified
LOC_Os08g103704/11retrotransposon protein, putative, unclassified
LOC_Os08g207004/11retrotransposon protein, putative, unclassified
LOC_Os04g139504/11retrotransposon protein, putative, unclassified
LOC_Os06g369004/11retrotransposon protein, putative, unclassified
LOC_Os08g118604/11retrotransposon protein, putative, unclassified
LOC_Os03g237704/11retrotransposon protein, putative, unclassified
LOC_Os04g053404/11retrotransposon protein, putative, unclassified
LOC_Os03g417104/11retrotransposon protein, putative, unclassified
LOC_Os07g458504/11retrotransposon protein, putative, unclassified
LOC_Os06g386033/11retrotransposon protein, putative, unclassified
LOC_Os09g030603/11retrotransposon protein, putative, unclassified
LOC_Os12g234203/11retrotransposon protein, putative, unclassified
LOC_Os04g444903/11retrotransposon protein, putative, unclassified
LOC_Os10g226203/11retrotransposon protein, putative, unclassified
LOC_Os07g163603/11retrotransposon protein, putative, unclassified
LOC_Os05g243803/11retrotransposon protein, putative, unclassified
LOC_Os09g010103/11retrotransposon protein, putative, unclassified
LOC_Os10g099603/11retrotransposon protein, putative, unclassified, expressed
LOC_Os05g179003/11retrotransposon protein, putative, unclassified
LOC_Os07g331703/11retrotransposon protein, putative, unclassified
LOC_Os08g052303/11retrotransposon protein, putative, unclassified
LOC_Os05g243703/11retrotransposon protein, putative, unclassified
LOC_Os12g235003/11retrotransposon protein, putative, unclassified
LOC_Os11g143403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g158902/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g263702/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os06g032502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g232302/11retrotransposon protein, putative, unclassified
LOC_Os10g120102/11retrotransposon protein, putative, unclassified
LOC_Os09g136402/11retrotransposon protein, putative, unclassified
LOC_Os02g219502/11retrotransposon protein, putative, unclassified
LOC_Os09g094302/11retrotransposon protein, putative, unclassified
LOC_Os01g380492/11retrotransposon protein, putative, unclassified
LOC_Os10g242902/11retrotransposon protein, putative, unclassified
LOC_Os04g187502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g166492/11retrotransposon protein, putative, unclassified
LOC_Os04g045502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g323702/11retrotransposon protein, putative, unclassified
LOC_Os10g173502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g463102/11retrotransposon protein, putative, unclassified
LOC_Os01g380582/11retrotransposon protein, putative, unclassified
LOC_Os12g144302/11retrotransposon protein, putative, unclassified
LOC_Os05g298402/11retrotransposon protein, putative, unclassified
LOC_Os04g159992/11retrotransposon protein, putative, unclassified
LOC_Os12g196301/11retrotransposon protein, putative, unclassified
LOC_Os10g048101/11retrotransposon protein, putative, unclassified
LOC_Os01g311501/11retrotransposon protein, putative, unclassified
LOC_Os04g210401/11retrotransposon protein, putative, unclassified
LOC_Os08g125401/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g424321/11retrotransposon protein, putative, unclassified
LOC_Os10g242801/11retrotransposon protein, putative, unclassified
LOC_Os04g220801/11retrotransposon protein, putative, unclassified
LOC_Os06g402601/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g048201/11retrotransposon protein, putative, unclassified
LOC_Os04g169101/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g05270OsAffx.8523.1.S1_at10/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05270OsAffx.14019.1.S1_at1/1110+2590932..2593264retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05280NANA10+2595176..2596265retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05290Os.46392.1.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_x_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.2.S1_s_at11/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.40388.1.S1_at4/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05290Os.4648.1.S1_at1/1110+2598950..2602808tRNA/rRNA methyltransferase, putative, expressed
LOC_Os10g05300OsAffx.18139.1.S1_at11/1110+2603646..2607190hypothetical protein
LOC_Os10g05309NANA10+2607958..2608341hypothetical protein
LOC_Os10g05320OsAffx.31869.5.S1_x_at11/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05320OsAffx.31869.4.S1_x_at1/1110+2611781..2612578retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g05329NANA10+2613607..2613990hypothetical protein
LOC_Os10g05340Os.46557.2.S1_x_at11/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340Os.46557.1.S1_x_at4/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05340OsAffx.21157.1.S1_x_at3/1110+2616803..2618194transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os10g05360NANA10+2627496..2629346hypothetical protein
LOC_Os10g05370OsAffx.30294.1.S1_at11/1110+2631640..2632893hypothetical protein
LOC_Os10g05380OsAffx.5954.5.S1_x_at11/1110+2634031..2638573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05380OsAffx.5954.1.S1_x_at3/1110+2634031..2638573retrotransposon protein, putative, Ty1-copia subclass
LOC_Os10g05380OsAffx.5954.3.S1_x_at3/1110+2634031..2638573retrotransposon protein, putative, Ty1-copia subclass

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31869.5.S1_x_at--951--14139Chr12:12662990..12663014 (25 bp)
AGAACCAGCTCAACCAAGGGAACAA
LOC_Os12g22430
OsAffx.31869.5.S1_x_at--1148--28736Chr12:12663005..12663029 (25 bp)
AAGGGAACAACAATGCTCCACCGCC
LOC_Os12g22430
OsAffx.31869.5.S1_x_at--1044--6536Chr10:2611952..2611976 (25 bp)
GATTTTCTTCGTGTGAAGCCACCTA
LOC_Os10g05320
OsAffx.31869.5.S1_x_at--1125--95350Chr12:12663076..12663100 (25 bp)
TCTAGCACTACCAACCCAGTGGAAG
LOC_Os12g22430
OsAffx.31869.5.S1_x_at--345--64513Chr10:2612120..2612144 (25 bp)
GATCAATTCCGGATGAACAGAGCAG
LOC_Os10g05320
OsAffx.31869.5.S1_x_at--113--5618Chr12:6285219..6285243 (25 bp)
GACAACCAATCACTTGGGCGGACTT
LOC_Os12g11590
OsAffx.31869.5.S1_x_at--158--318Chr12:6285269..6285293 (25 bp)
ATACCTACAGGAGTTGTTTCTTTGA
LOC_Os12g11590
OsAffx.31869.5.S1_x_at--1061--17736Chr12:12663355..12663379 (25 bp)
ACCGTGGCAGAGTATCTTCATGAGT
LOC_Os12g22430
OsAffx.31869.5.S1_x_at--214--22923Chr11:14540120..14540144 (25 bp)
AAATGACTGTATTCCAGGAGGCACA
LOC_Os11g26270
OsAffx.31869.5.S1_x_at--967--69349Chr12:12663599..12663623 (25 bp)
GTAGTAGCCAGAGGCAGCGTATCAA
LOC_Os12g22430
OsAffx.31869.5.S1_x_at--355--46146Chr12:12663615..12663639 (25 bp)
GCGTATCAAGCCACTCCAAATTGGT
LOC_Os12g22430
Target Sequence 
AGAACCAGCTCAACCAAGGGAACAACAATGCTCCACCGCCGCAGAACAAGTTAACTGATTTTCTTCGTGTGAAGCCACCT
ACCTTTTCTAGCACTACCAACCCAGTGGAAGCAGAATGGTGGGATCAATTCCGGATGAACAGAGCAGAAGGACAACCAAT
CACTTGGGCGGACTTCACGGAAGCATTCAAGAAGACACACATACCTACAGGAGTTGTTTCTTTGAAGAAGCGTGAGTTCA
GGGCATTGAAGCAAAAGGATCAAACCGTGGCAGAGTATCTTCATGAGTTCAATCGTCTGGCACGTTATGCTCCAGAAGAT
GTGCGTACTGACGAGGAAAGGCAGGAGAAGTTCTTGGAAGGCTTAAAGGATGAACTGTCAGTTACGTTGATCTCTCATGA
CTATGCTGATTTTCAGCAGTTGGTTGACAAAGCAACTCGACTTGAAGACAAGAAGAACAGGATGGATAACCGTAAAAGGA
AAATGACTGTATTCCAGGAGGCACAAGGTAGTAGCCAGAGGCAGCGTATCAAGCCACTCCAAATTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31869.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis