Browse Element(s) Details


OsAffx.31874.1.S1_at

Description tigr:9640.m02412
TID=OsAffx.31874.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2527010/11hypothetical protein
LOC_Os02g225901/11expressed protein
LOC_Os02g278301/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g25230OsAffx.7695.1.S1_at11/1112+14510876..14511691hypothetical protein
LOC_Os12g25240NANA12+14514640..14514972hypothetical protein
LOC_Os12g25250NANA12+14516707..14518155retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g25260OsAffx.31873.1.S1_x_at10/1112+14528246..14529435hypothetical protein
LOC_Os12g25260OsAffx.31873.1.S1_at9/1112+14528246..14529435hypothetical protein
LOC_Os12g25270OsAffx.31874.1.S1_at10/1112+14536060..14536517hypothetical protein
LOC_Os12g25280OsAffx.31875.1.S1_at11/1112+14538586..14539257hypothetical protein
LOC_Os12g25290NANA12+14552987..14556317transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g25300Os.14491.2.S1_x_at5/1112+14558680..14565849transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g25300OsAffx.22759.1.S1_at5/1112+14558680..14565849transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os12g25300Os.47463.1.S1_x_at5/1112+14558680..14565849transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31874.1.S1_at--1096--4473Chr12:14536232..14536256 (25 bp)
GCCTGGACTTGCAATATCGAATATA
LOC_Os12g25270
OsAffx.31874.1.S1_at--1057--51Chr12:14536256..14536280 (25 bp)
ATTGAGTTCTCTATTGCTTATGTTA
LOC_Os12g25270
OsAffx.31874.1.S1_at--208--6731Chr12:14536261..14536285 (25 bp)
GTTCTCTATTGCTTATGTTAGTGAA
LOC_Os12g25270
OsAffx.31874.1.S1_at--866--3071Chr12:14536297..14536321 (25 bp)
AATCATGTATATTGCTAGTGGCTTT
LOC_Os12g25270
OsAffx.31874.1.S1_at--470--7491Chr12:14536314..14536338 (25 bp)
GTGGCTTTGGTAAATCCCCAGTCCA
LOC_Os12g25270
OsAffx.31874.1.S1_at--457--7031Chr12:14536323..14536347 (25 bp)
GTAAATCCCCAGTCCACCATGACAA
LOC_Os12g25270
OsAffx.31874.1.S1_at--1153--10031Chr12:14536350..14536374 (25 bp)
TAGATGTTGCAAAGACCGTCTGTAC
LOC_Os12g25270
OsAffx.31874.1.S1_at--989--5131Chr12:14536358..14536382 (25 bp)
GCAAAGACCGTCTGTACTTTCATAA
LOC_Os12g25270
OsAffx.31874.1.S1_at--283--5831Chr12:14536363..14536387 (25 bp)
GACCGTCTGTACTTTCATAATGCAA
LOC_Os12g25270
OsAffx.31874.1.S1_at--356--3011Chr12:14536381..14536475 (25 bp)
AATGCAAATCGATTCCTATACCAGT
LOC_Os12g25270
OsAffx.31874.1.S1_at--309--9391NONE
TCGATTCCTATACCAGTACACCATG
NONE
Target Sequence 
GCCTGGACTTGCAATATCGAATATATTGAGTTCTCTATTGCTTATGTTAGTGAAGATTTTATTAAAATCATGTATATTGC
TAGTGGCTTTGGTAAATCCCCAGTCCACCATGACAACATAGATGTTGCAAAGACCGTCTGTACTTTCATAATGCAAATCG
ATTCCTATACCAGTACACCATG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31874.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis