Browse Element(s) Details


OsAffx.31930.2.S1_at

Description tigr:9635.m04790
TID=OsAffx.31930.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4752010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g47490OsAffx.5660.1.S1_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47490Os.50601.1.S1_x_at11/117+28390032..28398614Indole-3-acetic acid-amido synthetase GH3.9, putative, expressed
LOC_Os07g47500Os.10778.1.S1_at11/117+28400640..28407864Histone-arginine methyltransferase CARM1, putative, expressed
LOC_Os07g47510Os.11038.1.S1_at11/117+28408847..28411462Stress-related protein, putative, expressed
LOC_Os07g47520OsAffx.31930.2.S1_at10/117+28416048..28417048hypothetical protein
LOC_Os07g47530Os.13897.1.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47530Os.13897.2.S1_at10/117+28421949..28433622AAA-type ATPase family protein, putative, expressed
LOC_Os07g47540OsAffx.16752.1.S1_at10/117+28434405..28435753expressed protein
LOC_Os07g47550NANA7+28438338..28439762UDP-glucoronosyl and UDP-glucosyl transferase family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.31930.2.S1_at--810--5651Chr07:28416150..28416174 (25 bp)
GACATGCTCATCACCGATAACCACC
LOC_Os07g47520
OsAffx.31930.2.S1_at--423--4551Chr07:28416225..28416297 (25 bp)
GCCCAAAGAAATGCTATAAGCTCAC
LOC_Os07g47520
OsAffx.31930.2.S1_at--1020--2291NONE
AAATGGTGCTGAGATTCGATGACAA
NONE
OsAffx.31930.2.S1_at--1001--6571Chr07:28416918..28416942 (25 bp)
GATTCGATGACAAAATGACATACCT
LOC_Os07g47520
OsAffx.31930.2.S1_at--857--671Chr07:28416932..28416956 (25 bp)
ATGACATACCTATATGAACTTATTC
LOC_Os07g47520
OsAffx.31930.2.S1_at--1073--8971Chr07:28416946..28416970 (25 bp)
TGAACTTATTCCTCCATTGTATGTA
LOC_Os07g47520
OsAffx.31930.2.S1_at--334--91Chr07:28416953..28416977 (25 bp)
ATTCCTCCATTGTATGTAGGCCAGC
LOC_Os07g47520
OsAffx.31930.2.S1_at--1035--9211Chr07:28416958..28416982 (25 bp)
TCCATTGTATGTAGGCCAGCTTCCA
LOC_Os07g47520
OsAffx.31930.2.S1_at--356--8671Chr07:28416963..28416987 (25 bp)
TGTATGTAGGCCAGCTTCCAATCCG
LOC_Os07g47520
OsAffx.31930.2.S1_at--71--10691Chr07:28416978..28417002 (25 bp)
TTCCAATCCGCCAATTGCAGGCTTG
LOC_Os07g47520
OsAffx.31930.2.S1_at--26--9311Chr07:28416984..28417008 (25 bp)
TCCGCCAATTGCAGGCTTGCAAGGT
LOC_Os07g47520
Target Sequence 
GACATGCTCATCACCGATAACCACCTGCCTCTCCTCCTCCTCCAGAAGCTCGTCGCCGTCGAGACCGGCAAAGAAGCCCA
AAGAAATGCTATAAGCTCACCATTAACGGATTACTTGAAAAAGGGTGACATCGAGTATGAAGTGAACAAAATGGTGCTGA
GATTCGATGACAAAATGACATACCTATATGAACTTATTCCTCCATTGTATGTAGGCCAGCTTCCAATCCGCCAATTGCAG
GCTTGCAAGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.31930.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis