Browse Element(s) Details


OsAffx.32037.1.S1_at

Description tigr:9640.m03436
TID=OsAffx.32037.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3553011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35490OsAffx.7800.1.S1_at11/1112+21544805..21547341hypothetical protein
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32037.1.S1_at--23--1011Chr12:21569433..21569457 (25 bp)
AGGATCGTCGTAGTCACCCGGATGA
LOC_Os12g35530
OsAffx.32037.1.S1_at--317--511Chr12:21569436..21569460 (25 bp)
ATCGTCGTAGTCACCCGGATGACAA
LOC_Os12g35530
OsAffx.32037.1.S1_at--533--5991Chr12:21569442..21569466 (25 bp)
GTAGTCACCCGGATGACAACGTCCA
LOC_Os12g35530
OsAffx.32037.1.S1_at--748--7091Chr12:21569445..21569469 (25 bp)
GTCACCCGGATGACAACGTCCAGGA
LOC_Os12g35530
OsAffx.32037.1.S1_at--882--4251Chr12:21569450..21569474 (25 bp)
CCGGATGACAACGTCCAGGACTGAC
LOC_Os12g35530
OsAffx.32037.1.S1_at--799--8951Chr12:21569455..21569479 (25 bp)
TGACAACGTCCAGGACTGACGAGAT
LOC_Os12g35530
OsAffx.32037.1.S1_at--103--2591Chr12:21569459..21569483 (25 bp)
AACGTCCAGGACTGACGAGATCAAG
LOC_Os12g35530
OsAffx.32037.1.S1_at--868--9671Chr12:21569509..21569533 (25 bp)
TCACGACATCACATGGTGACGATGA
LOC_Os12g35530
OsAffx.32037.1.S1_at--538--8613Chr12:21569522..21569546 (25 bp)
TGGTGACGATGAAACTCGAGATCCC
LOC_Os12g35530
OsAffx.32037.1.S1_at--693--4471Chr12:21569561..21569585 (25 bp)
GCCTGAGGATGAGGTCGTAGGTCCA
LOC_Os12g35530
OsAffx.32037.1.S1_at--46--7951Chr12:21569567..21569591 (25 bp)
GGATGAGGTCGTAGGTCCAGGAGAC
LOC_Os12g35530
Target Sequence 
AGGATCGTCGTAGTCACCCGGATGACAACGTCCAGGACTGACGAGATCAAGGCGACAACAGACAAGGTTAACGACATCAC
GACATCACATGGTGACGATGAAACTCGAGATCCCCAGACTTCCAGAGGGCCTGAGGATGAGGTCGTAGGTCCAGGAGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32037.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis