Browse Element(s) Details


OsAffx.32038.1.S1_at

Description tigr:9640.m03437
TID=OsAffx.32038.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3554011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g35510OsAffx.19978.1.S1_x_at11/1112+21563962..21564348hypothetical protein
LOC_Os12g35520OsAffx.32036.1.S1_at9/1112+21566128..21566902hypothetical protein
LOC_Os12g35530OsAffx.32037.1.S1_at11/1112+21569403..21569621hypothetical protein
LOC_Os12g35540OsAffx.32038.1.S1_at11/1112+21575356..21580060hypothetical protein
LOC_Os12g35540OsAffx.32038.2.S1_at2/1112+21575356..21580060hypothetical protein
LOC_Os12g35550Os.55391.1.S1_at11/1112+21581383..21583899expressed protein
LOC_Os12g35560Os.6082.1.S1_at10/1112+21586064..21591497Kelch motif family protein, expressed
LOC_Os12g35570Os.8880.1.S1_a_at11/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35570Os.8880.3.S1_x_at10/1112+21591994..21596216Tryptophanyl-tRNA synthetase, putative, expressed
LOC_Os12g35580OsAffx.19979.1.S1_at11/1112+21603754..21605381riboflavin synthase, alpha subunit family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32038.1.S1_at--55--5551Chr12:21578279..21578303 (25 bp)
GAAACGACACCCACATTCGATACGT
LOC_Os12g35540
OsAffx.32038.1.S1_at--1093--10611Chr12:21578294..21578318 (25 bp)
TTCGATACGTCTCCACAAGAGCTGA
LOC_Os12g35540
OsAffx.32038.1.S1_at--855--3131Chr12:21578476..21578500 (25 bp)
AATTTTGTGTTATATCATCCTCGAT
LOC_Os12g35540
OsAffx.32038.1.S1_at--729--2831Chr12:21578532..21578556 (25 bp)
AAGTTTCTGAAATAGCTTCGCTGAA
LOC_Os12g35540
OsAffx.32038.1.S1_at--212--7331Chr12:21578634..21578658 (25 bp)
GTGCTATTTGCATTACTTGTGACAA
LOC_Os12g35540
OsAffx.32038.1.S1_at--630--4891Chr12:21578696..21578720 (25 bp)
GCTTTTGAACCTTCTTATGCTCAGC
LOC_Os12g35540
OsAffx.32038.1.S1_at--957--2531Chr12:21579937..21579961 (25 bp)
AACTCCTTTCGACAACTCTATCAAT
LOC_Os12g35540
OsAffx.32038.1.S1_at--259--371Chr12:21579956..21579980 (25 bp)
ATCAATGCCCTTAGTCATACTCTTG
LOC_Os12g35540
OsAffx.32038.1.S1_at--614--7131Chr12:21579969..21579993 (25 bp)
GTCATACTCTTGAACTCGAACATAT
LOC_Os12g35540
OsAffx.32038.1.S1_at--526--251Chr12:21579990..21580014 (25 bp)
ATATCTACCTCATTCTGACCATATC
LOC_Os12g35540
OsAffx.32038.1.S1_at--179--5851Chr12:21580006..21580030 (25 bp)
GACCATATCTAATGTTGCCTTCACT
LOC_Os12g35540
Target Sequence 
GAAACGACACCCACATTCGATACGTCTCCACAAGAGCTGAAAGGTAACAAAGACGAATCATATTTCTGCAAGCATGAAGA
GTTGGTGAGTGAATTTGTTGATACACTTGATCAACGTGATATTTTAATTGCAAATAAATTTGATCTTGTGGAACTGATTA
CTCATGATGAAGTCTTTACAAAAATATTGCCTGTTGAAATTTTGTGTTATATCATCCTCGATAAACATGTTGAAATACAC
GATATGCTTGAGAAAGTTTCTGAAATAGCTTCGCTGAAATCTTTGAATAGTATTCATGTATGCAAGTATACTTTTAATTT
GATTGGTGGATATGCTGAAAATAAATTCTATATGTGTGCTATTTGCATTACTTGTGACAAGCTTGCTGATTTGAGGTTAA
AATTAGTGAATAATCATGCTTTTGAACCTTCTTATGCTCAGCCCTCTCATCAGCCAGTTGCATACACCCCCGGAACTCCT
TTCGACAACTCTATCAATGCCCTTAGTCATACTCTTGAACTCGAACATATCTACCTCATTCTGACCATATCTAATGTTGC
CTTCACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32038.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis