Browse Element(s) Details


OsAffx.32068.1.S1_at

Description tigr:9640.m03637
TID=OsAffx.32068.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3748011/11pectinesterase inhibitor domain containing protein, expressed
LOC_Os08g289501/11Response regulator receiver domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g37430Os.15323.1.S1_at11/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37430Os.15323.1.S2_at10/1112+22939384..22942646PAPA-1-like conserved region family protein, expressed
LOC_Os12g37440NANA12+22946801..22948797hypothetical protein
LOC_Os12g37450NANA12+22951098..22954310transposon protein, putative, unclassified
LOC_Os12g37460NANA12+22954954..22961109transposon protein, putative, unclassified
LOC_Os12g37470NANA12+22962177..22964983Zinc knuckle family protein
LOC_Os12g37480OsAffx.32068.1.S1_at11/1112+22966329..22967412pectinesterase inhibitor domain containing protein, expressed
LOC_Os12g37490OsAffx.32069.1.S1_at11/1112+22968670..22970722acetyltransferase, GNAT family protein
LOC_Os12g37500NANA12+22977001..22980420retrotransposon protein, putative, LINE subclass
LOC_Os12g37510Os.27695.1.S1_at11/1112+22982283..22984116UDP-glucoronosyl and UDP-glucosyl transferase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000160biological_processtwo-component signal transduction system (phosphorelay)
GO:0006950biological_processresponse to stress
GO:0009735biological_processresponse to cytokinin stimulus
GO:0009736biological_processcytokinin mediated signaling
GO:0010017biological_processred or far red light signaling pathway
GO:0010161biological_processred light signaling pathway
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0000156molecular_functiontwo-component response regulator activity
GO:0005515molecular_functionprotein binding
GO:0030528molecular_functiontranscription regulator activity
GO:0046910molecular_functionpectinesterase inhibitor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32068.1.S1_at--218--8391Chr12:22966881..22966905 (25 bp)
GGCGACAAGGACACGACGGGCACCA
LOC_Os12g37480
OsAffx.32068.1.S1_at--719--9351Chr12:22966832..22966856 (25 bp)
TCGACACCTGCGACCAGGGCTTCGA
LOC_Os12g37480
OsAffx.32068.1.S1_at--1063--1711Chr12:22966820..22966844 (25 bp)
ACCAGGGCTTCGAGGAACGCGACGG
LOC_Os12g37480
OsAffx.32068.1.S1_at--229--9311Chr12:22966790..22966814 (25 bp)
TCCCGCCGCTCATGTCCAAGCAGGA
LOC_Os12g37480
OsAffx.32068.1.S1_at--335--1792Chr04:24564625..24564874 (25 bp)
ACCGATCGATATGATCCTATATATA
NONE
OsAffx.32068.1.S1_at--906--271Chr12:22966650..22966674 (25 bp)
ATAGTATACTACTACGTACATATAT
LOC_Os12g37480
OsAffx.32068.1.S1_at--233--4031Chr12:22966618..22966642 (25 bp)
GCGATAGAAAGAAAACCTAGACTTT
LOC_Os12g37480
OsAffx.32068.1.S1_at--376--4231Chr12:22966603..22966627 (25 bp)
CCTAGACTTTGGCACCTTAATTATT
LOC_Os12g37480
OsAffx.32068.1.S1_at--66--10251Chr12:22966596..22966620 (25 bp)
TTTGGCACCTTAATTATTATTTCCT
LOC_Os12g37480
OsAffx.32068.1.S1_at--469--10194Chr08:17580211..17580683 (25 bp)
TATTATTTCCTACGTTTCAGGTTAT
LOC_Os08g28950
OsAffx.32068.1.S1_at--1130--6771Chr12:22966562..22966586 (25 bp)
GTTATAAGAATTTTTAGTATTGCTC
LOC_Os12g37480
Target Sequence 
GGCGACAAGGACACGACGGGCACCATGCTCGACACGGCCCGCACCGACGTCGACACCTGCGACCAGGGCTTCGAGGAACG
CGACGGCGACATCCCGCCGCTCATGTCCAAGCAGGACGCCGAGCTCGCCAAGCTCGCCAGCAACTGCATCGCCATCGCCG
TCGCCGCCGGCCTCCGCTCCAGCAGCTAGACGCACGCCGCCGGCCGGCGACCGATCGATATGATCCTATATATAGTATAC
TACTACGTACATATATATATATAGCGATAGAAAGAAAACCTAGACTTTGGCACCTTAATTATTATTTCCTACGTTTCAGG
TTATAAGAATTTTTAGTATTGCTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32068.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis