Browse Element(s) Details


OsAffx.32083.4.S1_x_at

Description tigr:9637.m00125
TID=OsAffx.32083.4
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0282011/11hypothetical protein
LOC_Os01g283104/11Transposable element protein, putative, Transposase_24
LOC_Os02g132103/11Transposable element protein, putative, Transposase_24
LOC_Os12g384101/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g02810Os.15542.1.S1_at11/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_at2/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02810Os.52150.1.S1_x_at1/119+1297966..1311555CBF/Mak21 family protein, expressed
LOC_Os09g02820OsAffx.32083.4.S1_x_at11/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_at4/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.3.S1_x_at3/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.1.S1_x_at2/119+1319490..1322198hypothetical protein
LOC_Os09g02820OsAffx.32083.2.S1_x_at1/119+1319490..1322198hypothetical protein
LOC_Os09g02830OsAffx.6153.1.S1_at1/119+1324181..1324807SRF-type transcription factor family protein
LOC_Os09g02840NANA9+1331084..1336147transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02850OsAffx.17544.1.S1_at11/119+1336310..1337153hypothetical protein
LOC_Os09g02860OsAffx.29696.1.S1_at11/119+1340563..1341235hypothetical protein
LOC_Os09g02870Os.47463.1.S1_x_at6/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os09g02870Os.14491.2.S1_x_at4/119+1342927..1347922transposon protein, putative, CACTA, En/Spm sub-class

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32083.4.S1_x_at--948--1353Chr09:1321154..1321178 (25 bp)
AGAGCTAATAATTGGATTCTCCACC
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--995--3071Chr09:1321160..1321184 (25 bp)
AATAATTGGATTCTCCACCAGTTAG
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--1074--4352Chr09:1321174..1321198 (25 bp)
CCACCAGTTAGATGGCAAATTGAGA
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--737--5891Chr09:1321254..1321278 (25 bp)
GAGCATTGCAAACTGTGCCCAAAAC
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--361--1551Chr09:1321255..1321279 (25 bp)
AGCATTGCAAACTGTGCCCAAAACT
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--218--2393Chr09:1321263..1321287 (25 bp)
AAACTGTGCCCAAAACTGTTGCTGA
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--83--1972Chr09:1321265..1321289 (25 bp)
ACTGTGCCCAAAACTGTTGCTGAAT
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--1120--7991Chr09:1321811..1321835 (25 bp)
GGATGGCCAAGAAGTCAGTGTAGCT
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--1010--6771Chr09:1321853..1321877 (25 bp)
GTTAGAAGTGTTTGGACAGGATCGT
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--269--2111Chr09:1321868..1321892 (25 bp)
ACAGGATCGTAGTGGTAGAGTTAGA
LOC_Os09g02820
OsAffx.32083.4.S1_x_at--100--5033Chr09:1321957..1321981 (25 bp)
GCAGTGAAGGGAGTAGCTCCAGTAA
LOC_Os09g02820
Target Sequence 
AGAGCTAATAATTGGATTCTCCACCAGTTAGATGGCAAATTGAGACAGTACAAGTCAAAACTGAAAAAGGGCTATTACAA
GCCTAACTTACCTATGGAACGAGCATTGCAAACTGTGCCCAAAACTGTTGCTGAATCTCAATGGGCCACCCTAGTTTCTT
ACTGGTACTCAGAGGATTCTAAGAATGAAGTATATATGAAATTGGCTGAGAAAAGAGTGGATGGCCAAGAAGTCAGTGTA
GCTGATTTTGAACAAACTATGTTAGAAGTGTTTGGACAGGATCGTAGTGGTAGAGTTAGAGGCATGGGTCCAACCATTAT
TCCAACAAACTATTATGGTGGAAGATTTTCGAATATATTAGGAAGCAGTGAAGGGAGTAGCTCCAGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32083.4.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis