Browse Element(s) Details


OsAffx.32093.1.S1_at

Description tigr:9640.m03831
TID=OsAffx.32093.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3930011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g39240OsAffx.20024.1.S1_x_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.20024.1.S1_at11/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39240OsAffx.28081.1.S1_x_at1/1112+24121390..24123404Cytochrome P450 family protein
LOC_Os12g39250OsAffx.32091.1.S1_at8/1112+24126935..24127811hypothetical protein
LOC_Os12g39260NANA12+24129827..24134840retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g39270NANA12+24135400..24137958hypothetical protein
LOC_Os12g39280OsAffx.17637.1.S1_at5/1112+24141946..24142320hypothetical protein
LOC_Os12g39290Os.55478.1.S1_at1/1112+24143716..24145049hypothetical protein
LOC_Os12g39300OsAffx.32093.1.S1_at11/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39300OsAffx.20024.1.S1_x_at1/1112+24147048..24148760Cytochrome P450 family protein, expressed
LOC_Os12g39310Os.2289.1.S1_at11/1112+24150712..24152998Cytochrome P450 family protein, expressed
LOC_Os12g39320Os.24577.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.5169.1.S1_at11/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39320Os.34829.1.S1_at1/1112+24157896..24164087early-responsive to dehydration protein, putative, expressed
LOC_Os12g39330Os.56201.1.S1_at11/1112+24169201..24170641AP2 domain containing protein, expressed
LOC_Os12g39340Os.57018.1.S1_at11/1112+24171221..24174707glycosyl transferase, group 1 family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32093.1.S1_at--1154--2891Chr12:24147575..24147599 (25 bp)
AAGGTCAGGGCCGAGATAGACGCCA
LOC_Os12g39300
OsAffx.32093.1.S1_at--628--7811Chr12:24147573..24147597 (25 bp)
GGTCAGGGCCGAGATAGACGCCAAC
LOC_Os12g39300
OsAffx.32093.1.S1_at--23--4071Chr12:24147435..24147459 (25 bp)
CGAGGCCATGGAGGATTGCAAGGTG
LOC_Os12g39300
OsAffx.32093.1.S1_at--220--51Chr12:24147421..24147445 (25 bp)
ATTGCAAGGTGGGTGGCTACCATGT
LOC_Os12g39300
OsAffx.32093.1.S1_at--419--7531Chr12:24147409..24147433 (25 bp)
GTGGCTACCATGTCCGGCGTGGCAC
LOC_Os12g39300
OsAffx.32093.1.S1_at--254--1731Chr12:24147403..24147427 (25 bp)
ACCATGTCCGGCGTGGCACGATGAT
LOC_Os12g39300
OsAffx.32093.1.S1_at--506--8711Chr12:24147399..24147423 (25 bp)
TGTCCGGCGTGGCACGATGATCCTC
LOC_Os12g39300
OsAffx.32093.1.S1_at--262--8371Chr12:24147394..24147418 (25 bp)
GGCGTGGCACGATGATCCTCGTGAA
LOC_Os12g39300
OsAffx.32093.1.S1_at--497--4671Chr12:24147393..24147417 (25 bp)
GCGTGGCACGATGATCCTCGTGAAC
LOC_Os12g39300
OsAffx.32093.1.S1_at--899--7511Chr12:24147391..24147415 (25 bp)
GTGGCACGATGATCCTCGTGAACGC
LOC_Os12g39300
OsAffx.32093.1.S1_at--454--8511Chr12:24147390..24147414 (25 bp)
TGGCACGATGATCCTCGTGAACGCG
LOC_Os12g39300
Target Sequence 
AAGGTCAGGGCCGAGATAGACGCCAACGTCGGCGCGGCGCGGCTGGTGGAGGAGGCCGACATGGCGAGCCTCCCCTACCT
CCAGTGCGTCGTCAAGGAGACCCTCCGGCTCCGCCCCGTCGGCCCGGTGATCCCGGCGCACGAGGCCATGGAGGATTGCA
AGGTGGGTGGCTACCATGTCCGGCGTGGCACGATGATCCTCGTGAACGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32093.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis