Browse Element(s) Details


OsAffx.3210.1.S1_at

Description tigr:9631.m01189
TID=OsAffx.3210.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1264011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g12610Os.25986.3.S1_x_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12610Os.25986.1.S1_a_at11/113+6677412..66854485'-3' exonuclease, N-terminal resolvase-like domain containing protein, expressed
LOC_Os03g12620Os.45998.1.S1_x_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620Os.45998.1.S1_at11/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12620OsAffx.25070.1.S1_at2/113+6685350..6689458Glucan endo-1,3-beta-glucosidase 7 precursor, putative, expressed
LOC_Os03g12630Os.53367.1.S1_at11/113+6695524..6699225expressed protein
LOC_Os03g12630Os.51565.1.S1_x_at10/113+6695524..6699225expressed protein
LOC_Os03g12640OsAffx.3210.1.S1_at11/113+6699862..6700210hypothetical protein
LOC_Os03g12650OsAffx.9045.1.S1_x_at3/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12650OsAffx.9045.1.S1_at2/113+6712811..6715635retrotransposon protein, putative, unclassified
LOC_Os03g12660OsAffx.10060.1.S1_at10/113+6716888..6723416Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3210.1.S1_at--299--8231Chr03:6700149..6700173 (25 bp)
GGCAACCGGCATCGAACGTTCCGAT
LOC_Os03g12640
OsAffx.3210.1.S1_at--944--5451Chr03:6700136..6700160 (25 bp)
GAACGTTCCGATCATGGCACAGAGC
LOC_Os03g12640
OsAffx.3210.1.S1_at--250--8251Chr03:6700121..6700145 (25 bp)
GGCACAGAGCTTTGCTCCGACAAGA
LOC_Os03g12640
OsAffx.3210.1.S1_at--275--4811Chr03:6700091..6700115 (25 bp)
GCTCGGAGCTAGTAACACAGTGTCA
LOC_Os03g12640
OsAffx.3210.1.S1_at--358--4191Chr03:6700062..6700086 (25 bp)
CCCTGTGCCGAACCATGGACAATGA
LOC_Os03g12640
OsAffx.3210.1.S1_at--1079--5591Chr03:6700045..6700069 (25 bp)
GACAATGATGATGGCCTTATCCCCT
LOC_Os03g12640
OsAffx.3210.1.S1_at--810--9451Chr03:6699963..6700045 (25 bp)
TCTGGTAACCAGACATGGTGCCTCT
LOC_Os03g12640
OsAffx.3210.1.S1_at--276--2111Chr03:6699951..6699972 (22 bp)
ACATGGTGCCTCTGCCTTTTTTACA
LOC_Os03g12640
OsAffx.3210.1.S1_at--1074--10371Chr03:6699933..6699957 (25 bp)
TTTTACAAGGCACTCAAGCTCTCGA
LOC_Os03g12640
OsAffx.3210.1.S1_at--969--2691Chr03:6699918..6699942 (25 bp)
AAGCTCTCGAAGAACGATGCCAGCA
LOC_Os03g12640
OsAffx.3210.1.S1_at--808--6351Chr03:6699903..6699927 (25 bp)
GATGCCAGCAATCAGTACTGCAGAA
LOC_Os03g12640
Target Sequence 
GGCAACCGGCATCGAACGTTCCGATCATGGCACAGAGCTTTGCTCCGACAAGAGCTAAGCTCGGAGCTAGTAACACAGTG
TCAGTGGCCCTGTGCCGAACCATGGACAATGATGATGGCCTTATCCCCTCTGGTAACCAGACATGGTGCCTCTGCCTTTT
TTACAAGGCACTCAAGCTCTCGAAGAACGATGCCAGCAATCAGTACTGCAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3210.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis