Browse Element(s) Details


OsAffx.32119.1.S1_at

Description tigr:9640.m03941
TID=OsAffx.32119.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=F-box domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4031011/11F-box domain containing protein
LOC_Os12g403702/11F-box domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40290OsAffx.7842.1.S1_at11/1112+24920974..24922080hypothetical protein
LOC_Os12g40300Os.9360.1.S1_at11/1112+24924402..24927669Skp1 family, dimerisation domain containing protein, expressed
LOC_Os12g40310OsAffx.32119.1.S1_at11/1112+24928403..24930608F-box domain containing protein
LOC_Os12g40320OsAffx.20052.1.S1_x_at11/1112+24932038..24934006F-box domain containing protein
LOC_Os12g40330OsAffx.20051.1.S1_at11/1112+24940864..24941484expressed protein
LOC_Os12g40340Os.7648.1.S1_at11/1112+24942255..24947447EXS family protein, putative, expressed
LOC_Os12g40350OsAffx.20052.1.S1_x_at11/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350OsAffx.20052.2.S1_at1/1112+24950934..24952937F-box domain containing protein
LOC_Os12g40350Os.54823.1.S1_at1/1112+24950934..24952937F-box domain containing protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32119.1.S1_at--1083--571Chr12:24929635..24929659 (25 bp)
ATCCAGGATCTGCATCGTTGACGCG
LOC_Os12g40310
OsAffx.32119.1.S1_at--628--6411Chr12:24929687..24929711 (25 bp)
GATCTCTTCATCACCGTCTTGGAGA
LOC_Os12g40310
OsAffx.32119.1.S1_at--213--8012Chr12:24929842..24929866 (25 bp)
GGATGGTGCAGCGTCCTCCAAAGAA
LOC_Os12g40310
OsAffx.32119.1.S1_at--492--1631Chr12:24929851..24929875 (25 bp)
AGCGTCCTCCAAAGAAGCGTTCTGT
LOC_Os12g40310
OsAffx.32119.1.S1_at--429--7431Chr12:24929951..24929975 (25 bp)
GTGTTTCCCACTCTTAGAGCAACTG
LOC_Os12g40310
OsAffx.32119.1.S1_at--1127--6811Chr12:24930346..24930370 (25 bp)
GTTTCAAGCATCACCTGAGGCGGAT
LOC_Os12g40310
OsAffx.32119.1.S1_at--145--5411Chr12:24930432..24930456 (25 bp)
GAAGCTCGAGCTGGGACACAGTTCA
LOC_Os12g40310
OsAffx.32119.1.S1_at--325--2291Chr12:24930457..24930481 (25 bp)
AAATGTTACTCCCACTAGGCAGCAA
LOC_Os12g40310
OsAffx.32119.1.S1_at--744--10092Chr12:24930472..24930496 (25 bp)
TAGGCAGCAATACCGACAACATCTC
LOC_Os12g40310
OsAffx.32119.1.S1_at--45--2891Chr12:24930506..24930530 (25 bp)
AAGGTGGCTTATCGAACATTTCAGA
LOC_Os12g40310
OsAffx.32119.1.S1_at--702--9651Chr12:24930553..24930577 (25 bp)
TCAGAGACGGGCATGTGTCCATTAT
LOC_Os12g40310
Target Sequence 
ATCCAGGATCTGCATCGTTGACGCGCCCAGCCTGCGAAGAATCGGCTCTCTCGATCTCTTCATCACCGTCTTGGAGATCA
AAGGCGTTGTGATTCAGGCTGGGATGGTGCAGCGTCCTCCAAAGAAGCGTTCTGTCAGGATTCTCGGCTTACGGGTGAAC
TACACAGAGATGGGTCACAGGGTGCCCCGTGAGATAGAGCAGATTCTGAAGTGTTTCCCACTCTTAGAGCAACTGGAGAT
CATGAGAGACGATGAGGTTACACAAGAAGAAAGGCTCCTCGAAGCGGATGATGAACACATCTATCAAGGGAACAATTTCT
TCCGTGACCTTGGTTGTTTCAAGCATCACCTGAGGCGGATATATCTTACAGGTTTCAGAGGGGGCAAGTATGAACTTGCT
CTGGGCAAAGCCATCCTCGACGAAGCTCGAGCTGGGACACAGTTCAAAATGTTACTCCCACTAGGCAGCAATACCGACAA
CATCTCGAACCAGCAAAGGTGGCTTATCGAACATTTCAGAATGAACACTCCAAATGATGCTGTCAGAGACGGGCATGTGT
CCATTAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32119.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis