Browse Element(s) Details


OsAffx.32126.1.S1_at

Description tigr:9640.m04007
TID=OsAffx.32126.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4096011/11AP2 domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g40920Os.26437.1.A1_s_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.20062.1.S1_at11/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920Os.26437.1.A1_at10/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_x_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40920OsAffx.10340.1.S1_at8/1112+25297076..25302872bZIP transcription factor family protein, expressed
LOC_Os12g40930OsAffx.20063.1.S1_at11/1112+25304088..25306843hypothetical protein
LOC_Os12g40940Os.49988.1.S1_at11/1112+25311775..25313248expressed protein
LOC_Os12g40950NANA12+25324887..25325406hypothetical protein
LOC_Os12g40960OsAffx.32126.1.S1_x_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40960OsAffx.32126.1.S1_at11/1112+25326352..25326768AP2 domain containing protein
LOC_Os12g40970Os.14491.2.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40970Os.47463.1.S1_x_at1/1112+25327069..25328925transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g40980NANA12+25330713..25331532hypothetical protein
LOC_Os12g40990OsAffx.20065.1.S1_at8/1112+25333243..25335275hypothetical protein
LOC_Os12g41000NANA12+25337542..25343357retrotransposon protein, putative, unclassified
LOC_Os12g41010NANA12+25343985..25347266retrotransposon protein, putative, unclassified
LOC_Os12g41020NANA12+25348084..25349022retrotransposon protein, putative, unclassified
LOC_Os12g41030NANA12+25351562..25351984AP2 domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009737biological_processresponse to abscisic acid stimulus
GO:0009873biological_processethylene mediated signaling pathway
GO:0010105biological_processnegative regulation of ethylene mediated signaling pathway
GO:0045449biological_processregulation of transcription
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0005515molecular_functionprotein binding
GO:0016564molecular_functiontranscriptional repressor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32126.1.S1_at--1158--8451Chr12:25326557..25326581 (25 bp)
TGGCCGAGATGGTAGCCCCCGCCGG
LOC_Os12g40960
OsAffx.32126.1.S1_at--122--4171Chr12:25326608..25326632 (25 bp)
CGCCGGTGTTGCTGGGTAATGCATT
LOC_Os12g40960
OsAffx.32126.1.S1_at--139--4731Chr12:25326618..25326642 (25 bp)
GCTGGGTAATGCATTGGAGGCAACA
LOC_Os12g40960
OsAffx.32126.1.S1_at--1042--7051Chr12:25326623..25326647 (25 bp)
GTAATGCATTGGAGGCAACAAATGG
LOC_Os12g40960
OsAffx.32126.1.S1_at--102--3271Chr12:25326638..25326662 (25 bp)
CAACAAATGGGTGGGAGTTCGAGCC
LOC_Os12g40960
OsAffx.32126.1.S1_at--523--2971Chr12:25326643..25326667 (25 bp)
AATGGGTGGGAGTTCGAGCCCTACA
LOC_Os12g40960
OsAffx.32126.1.S1_at--321--7491Chr12:25326648..25326672 (25 bp)
GTGGGAGTTCGAGCCCTACAGCTGC
LOC_Os12g40960
OsAffx.32126.1.S1_at--112--8051Chr12:25326651..25326675 (25 bp)
GGAGTTCGAGCCCTACAGCTGCATG
LOC_Os12g40960
OsAffx.32126.1.S1_at--627--1231Chr12:25326653..25326677 (25 bp)
AGTTCGAGCCCTACAGCTGCATGGG
LOC_Os12g40960
OsAffx.32126.1.S1_at--942--3711Chr12:25326663..25326687 (25 bp)
CTACAGCTGCATGGGGCTCGTCGTA
LOC_Os12g40960
OsAffx.32126.1.S1_at--200--4231Chr12:25326710..25326734 (25 bp)
CCGACGAGCCGGCACTGGTGGAGAA
LOC_Os12g40960
Target Sequence 
TGGCCGAGATGGTAGCCCCCGCCGGCGTCGAGCCGGCAGCCGGGGAGATGGCGCCGGTGTTGCTGGGTAATGCATTGGAG
GCAACAAATGGGTGGGAGTTCGAGCCCTACAGCTGCATGGGGCTCGTCGTAGGCGGCGCCGTGTACAACTTCGCCGACGA
GCCGGCACTGGTGGAGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32126.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis