Browse Element(s) Details


OsAffx.32133.1.S1_at

Description tigr:9640.m04049
TID=OsAffx.32133.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4137011/11RNA recognition motif family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41290Os.10023.1.S1_at8/1112+25571379..25578466Spc97/Spc98 family protein, expressed
LOC_Os12g41300OsAffx.20069.1.S1_at11/1112+25578869..25580708F-box domain containing protein
LOC_Os12g41310OsAffx.32132.1.S1_at11/1112+25580990..25581514RNA recognition motif family protein
LOC_Os12g41320OsAffx.7854.1.S1_at11/1112+25582090..25582524hypothetical protein
LOC_Os12g41320OsAffx.23570.1.S1_x_at1/1112+25582090..25582524hypothetical protein
LOC_Os12g41340OsAffx.25095.5.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41340OsAffx.25095.3.S1_x_at1/1112+25587057..25588114transposon protein, putative, unclassified
LOC_Os12g41350Os.54142.1.S1_at11/1112+25589064..25594650HORMA domain containing protein, expressed
LOC_Os12g41360OsAffx.7855.1.S1_at10/1112+25595542..25596342hypothetical protein
LOC_Os12g41370OsAffx.32133.1.S1_x_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41370OsAffx.32133.1.S1_at11/1112+25597051..25597566RNA recognition motif family protein
LOC_Os12g41380OsAffx.20071.1.S1_x_at11/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41380Os.53443.1.S1_at10/1112+25598951..25604862Ulp1 protease family, C-terminal catalytic domain containing protein, expressed
LOC_Os12g41390Os.6156.1.S1_a_at11/1112+25608238..25611838Homocysteine S-methyltransferase 3, putative, expressed
LOC_Os12g41400Os.24938.1.S1_at11/1112+25613833..25618619Eukaryotic translation initiation factor 2 gamma subunit, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006413biological_processtranslational initiation
GO:0005852cellular_componenteukaryotic translation initiation factor 3 complex
GO:0003723molecular_functionRNA binding
GO:0003743molecular_functiontranslation initiation factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32133.1.S1_at--546--8511Chr12:25597488..25597512 (25 bp)
TGGAAGGACCCAAACGCCGAGTCGT
LOC_Os12g41370
OsAffx.32133.1.S1_at--8--6191Chr12:25597407..25597431 (25 bp)
GAGGAGCACACGGAGCTCACGTGCC
LOC_Os12g41370
OsAffx.32133.1.S1_at--616--971Chr12:25597406..25597430 (25 bp)
AGGAGCACACGGAGCTCACGTGCCC
LOC_Os12g41370
OsAffx.32133.1.S1_at--747--1911Chr12:25597398..25597422 (25 bp)
ACGGAGCTCACGTGCCCCTACAACT
LOC_Os12g41370
OsAffx.32133.1.S1_at--993--9291Chr12:25597274..25597298 (25 bp)
TCCGCCGCTTCGTGCGCGTGAGCAA
LOC_Os12g41370
OsAffx.32133.1.S1_at--368--7291Chr12:25597263..25597287 (25 bp)
GTGCGCGTGAGCAACCTGCCGGCGA
LOC_Os12g41370
OsAffx.32133.1.S1_at--329--9671Chr12:25597208..25597232 (25 bp)
TCACCGGGTTCGGGCCGCTGCGGAT
LOC_Os12g41370
OsAffx.32133.1.S1_at--857--4131Chr12:25597193..25597217 (25 bp)
CGCTGCGGATGTGGCACGTCGCCAT
LOC_Os12g41370
OsAffx.32133.1.S1_at--278--4691Chr12:25597189..25597213 (25 bp)
GCGGATGTGGCACGTCGCCATGGAC
LOC_Os12g41370
OsAffx.32133.1.S1_at--1134--7571Chr12:25597092..25597116 (25 bp)
GGGCTCAACTGCTTTAGCTTCGGTG
LOC_Os12g41370
OsAffx.32133.1.S1_at--48--4831Chr12:25597090..25597114 (25 bp)
GCTCAACTGCTTTAGCTTCGGTGGC
LOC_Os12g41370
Target Sequence 
TGGAAGGACCCAAACGCCGAGTCGTGCTGCATCTGCGGCGGCGAGGCGGCGGCGGCGACGACGGTGGCGGAGGCGGAGGA
GGAGGAGCACACGGAGCTCACGTGCCCCTACAACTACCTCGCCCCGGCGGCCGCGCGCTGCTACGTGCCGTGCCGGGCGA
GGCGCGCCGCCTGGAGGGGGGACGCGGCGGGGGCGTCGGAGCGCCGCCGCTTCCTCCGCCGCTTCGTGCGCGTGAGCAAC
CTGCCGGCGAGCTGCCGGCCGGCCGACCTCGCCGGGCTCCTCACCGGGTTCGGGCCGCTGCGGATGTGGCACGTCGCCAT
GGACGGGCCCCGGGAGTGCAAGGGGTTCGCCGCCGTCGTGTTCGAGCGGCGGGAGCACGCCGACGAGGCCATCGAGGGGC
TCAACTGCTTTAGCTTCGGTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32133.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis