Browse Element(s) Details


OsAffx.32147.1.S1_at

Description tigr:9640.m04122
TID=OsAffx.32147.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AL161548 lipase-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g4197011/11Lipase family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g41940Os.57136.1.S1_at10/1112+25964821..25968018Remorin, C-terminal region family protein, expressed
LOC_Os12g41950Os.22272.1.S1_at10/1112+25968764..25974737Auxin response factor 6, putative, expressed
LOC_Os12g41956Os.12400.1.S1_x_at9/1112+25983062..25987159Galactosyltransferase family, putative, expressed
LOC_Os12g41962Os.35155.1.S1_at11/1112+25988161..25992511expressed protein
LOC_Os12g41970OsAffx.32147.1.S1_at11/1112+25992801..25993931Lipase family protein
LOC_Os12g41980OsAffx.32148.1.S1_at11/1112+26000435..26001631Lipase family protein
LOC_Os12g41990OsAffx.21485.1.S1_at5/1112+26005139..26006857transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os12g42000OsAffx.32149.3.S1_at11/1112+26010614..26011272hypothetical protein
LOC_Os12g42000Os.29072.1.S1_at2/1112+26010614..26011272hypothetical protein
LOC_Os12g42010OsAffx.7860.1.S1_at11/1112+26012052..26013206Lipase family protein

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Gene Ontology Classification
GO idTypeName
GO:0006629biological_processlipid metabolism
GO:0004806molecular_functiontriacylglycerol lipase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32147.1.S1_at--556--7551Chr12:25993280..25993304 (25 bp)
GTGGCCGTGATGACCGCCCACGACG
LOC_Os12g41970
OsAffx.32147.1.S1_at--610--511Chr12:25993121..25993145 (25 bp)
ATCGTCAAGCAGGACATCGTGCCGA
LOC_Os12g41970
OsAffx.32147.1.S1_at--973--4991Chr12:25993113..25993137 (25 bp)
GCAGGACATCGTGCCGAAGCTGCCG
LOC_Os12g41970
OsAffx.32147.1.S1_at--459--8191Chr12:25993084..25993108 (25 bp)
GGAAGGAGTACGTCGACGCCAGCGA
LOC_Os12g41970
OsAffx.32147.1.S1_at--897--1851Chr12:25993033..25993057 (25 bp)
ACGACGGCGGCAACTGGTTGTCGCC
LOC_Os12g41970
OsAffx.32147.1.S1_at--940--4211Chr12:25993010..25993034 (25 bp)
CCGCTGGAGCTGATCAGGGCGCACA
LOC_Os12g41970
OsAffx.32147.1.S1_at--134--9651Chr12:25992997..25993021 (25 bp)
TCAGGGCGCACAGCCTGAACCTGTA
LOC_Os12g41970
OsAffx.32147.1.S1_at--947--8971Chr12:25992982..25993006 (25 bp)
TGAACCTGTACCTGCAACTCATCAC
LOC_Os12g41970
OsAffx.32147.1.S1_at--482--371Chr12:25992941..25992965 (25 bp)
ATCACTTCCGTGCTCAGCAATTCGA
LOC_Os12g41970
OsAffx.32147.1.S1_at--1057--1471Chr12:25992926..25992950 (25 bp)
AGCAATTCGAACAGCGATGCGCCGC
LOC_Os12g41970
OsAffx.32147.1.S1_at--473--991Chr12:25992856..25992880 (25 bp)
AGGAGGGATACATGCGGCTGCCGCT
LOC_Os12g41970
Target Sequence 
GTGGCCGTGATGACCGCCCACGACGTCGCGGCGGCGCTGGCCGCCGACGCCGACGCCGAGGGCGTTCGTGTCCGCGCCGT
GACGTTCGGCGCGCCGCGCGTCGGCGACGACGCGTTCCGCCGCGCCGTCGCCGCGCGCGGCGTGGAGGTGTTCCGCGTCA
TCGTCAAGCAGGACATCGTGCCGAAGCTGCCGATGGGGAAGGAGTACGTCGACGCCAGCGACGGCGACTACGACATCATC
AAGCTCGACGACGGCGGCAACTGGTTGTCGCCGCTGGAGCTGATCAGGGCGCACAGCCTGAACCTGTACCTGCAACTCAT
CACCCTGCGTAACCCCGCCATCACTTCCGTGCTCAGCAATTCGAACAGCGATGCGCCGCCGCCGCCGCCGGCGGTGAGAG
AGGAGTGGGTGAATATGAAGGAGGAGGAGGGATACATGCGGCTGCCGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32147.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis