Browse Element(s) Details


OsAffx.32213.1.S1_s_at

Description gb:X15901.1
DB_XREF= gi:11957
GEN=psaB
TID=OsAffx.32213.1
CNT=1
FEA=DNA_24
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PSI P700 apoprotein A2 (Oryza sativa (japonica cultivar-group)) chloroplast
PROD=PSI P700 apoprotein A2
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g1675011/11Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os10g3824811/11Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g16720OsAffx.32221.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720Os.26596.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32220.1.S1_s_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32219.1.S1_x_at11/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16720OsAffx.32241.1.S1_x_at10/114+9081553..9085412ribosomal protein S15 containing protein
LOC_Os04g16730Os.46404.1.S1_x_at5/114+9089112..9089957Photosystem Q, putative
LOC_Os04g16740OsAffx.30475.3.S1_s_at11/114+9103443..9105093ATP synthase alpha chain, putative, expressed
LOC_Os04g16750OsAffx.32212.1.S1_x_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750Os.26751.2.S1_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_s_at11/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16750OsAffx.32213.1.S1_x_at6/114+9105424..9106407Photosystem I P700 chlorophyll a apoprotein A2, putative, expressed
LOC_Os04g16760OsAffx.32214.1.S1_x_at11/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16760Os.26751.1.S1_s_at9/114+9107979..9110484Photosystem I P700 chlorophyll a apoprotein A1, putative, expressed
LOC_Os04g16770Os.46404.1.S1_x_at11/114+9116019..9117080Photosystem Q, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009768biological_processphotosynthesis, light harvesting in photosystem I
GO:0009769biological_processphotosynthesis, light harvesting in photosystem II
GO:0015979biological_processphotosynthesis
GO:0009507cellular_componentchloroplast
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0009538cellular_componentphotosystem I reaction center
GO:0009539cellular_componentphotosystem II reaction center
GO:0016168molecular_functionchlorophyll binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32213.1.S1_s_at--730--8994Chr10:20146946..20146970 (25 bp)
TGAATCCTCCACTTATTTGATGGGA
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--872--9174Chr10:20146953..20146977 (25 bp)
TCCACTTATTTGATGGGATGGTTAA
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--311--794Chr10:20146970..20146994 (25 bp)
ATGGTTAAGAGATTACCTATGGTTA
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--453--1256Chr10:20146979..20147003 (25 bp)
AGATTACCTATGGTTAAACTCTTCA
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--640--3194Chr10:20147012..20147036 (25 bp)
CAATGGATATAATCCTTTTGGGATG
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--1006--554Chr10:20147023..20147047 (25 bp)
ATCCTTTTGGGATGAATAGTTTATC
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--1154--3094Chr10:20147037..20147061 (25 bp)
AATAGTTTATCGGTATGGGCGTGGA
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--966--9414Chr10:20147046..20147070 (25 bp)
TCGGTATGGGCGTGGATGTTCTTAT
LOC_Os10g38248
OsAffx.32213.1.S1_s_at--570--7575Chr12:22668229..22668249 (21 bp)
GGGCGTGGATGTTCTTATTTGGACA
NONE
OsAffx.32213.1.S1_s_at--608--10195Chr12:22668240..22668264 (25 bp)
TATTTGGACATCTTGTTTGGGCGAC
NONE
OsAffx.32213.1.S1_s_at--781--10835Chr12:22668243..22668267 (25 bp)
TTGGACATCTTGTTTGGGCGACTGG
NONE
Target Sequence 
TGAATCCTCCACTTATTTGATGGGATGGTTAAGAGATTACCTATGGTTAAACTCTTCACAACTTATCAATGGATATAATC
CTTTTGGGATGAATAGTTTATCGGTATGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCGACTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32213.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis