Browse Element(s) Details


OsAffx.3223.1.S1_at

Description tigr:9631.m01264
TID=OsAffx.3223.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1334011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g13300Os.47761.1.S1_at8/113+7160193..7163149Glutamate decarboxylase, putative, expressed
LOC_Os03g13310NANA3+7163506..7164234Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g13320OsAffx.10490.1.S1_at10/113+7166714..7173522retrotransposon protein, putative, unclassified, expressed
LOC_Os03g13340OsAffx.3223.1.S1_at11/113+7178091..7179239hypothetical protein
LOC_Os03g13350NANA3+7181451..7185948retrotransposon protein, putative, unclassified
LOC_Os03g13360OsAffx.3224.1.S1_at11/113+7188527..7189153hypothetical protein
LOC_Os03g13370OsAffx.25081.1.S1_at10/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13370Os.6803.1.S1_at1/113+7190542..7198743TPR Domain containing protein, expressed
LOC_Os03g13380Os.8333.1.S1_at11/113+7202883..7207233Endomembrane protein 70 containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3223.1.S1_at--577--651Chr03:7178642..7178666 (25 bp)
ATGCAAATAACCTCGTACGCCATGC
LOC_Os03g13340
OsAffx.3223.1.S1_at--517--6111Chr03:7178583..7178607 (25 bp)
GAGTGGCAAGCACCACGGCACGTTC
LOC_Os03g13340
OsAffx.3223.1.S1_at--1025--1711Chr03:7178405..7178429 (25 bp)
ACCACCTTCAGTAGTGTGGCGGCGG
LOC_Os03g13340
OsAffx.3223.1.S1_at--7--8991Chr03:7178350..7178374 (25 bp)
TGAACGCGGAGCACCTCTTCCAGGA
LOC_Os03g13340
OsAffx.3223.1.S1_at--147--9571Chr03:7178335..7178359 (25 bp)
TCTTCCAGGAGGATCATCCGGAGCG
LOC_Os03g13340
OsAffx.3223.1.S1_at--34--6071Chr03:7178276..7178300 (25 bp)
GAGTTCTGCATCGTGGAGTCCGTGA
LOC_Os03g13340
OsAffx.3223.1.S1_at--183--511Chr03:7178267..7178291 (25 bp)
ATCGTGGAGTCCGTGACGCCGAAAT
LOC_Os03g13340
OsAffx.3223.1.S1_at--853--1151Chr03:7178206..7178230 (25 bp)
AGTACGTGCTCCGTGTCACCAGGTT
LOC_Os03g13340
OsAffx.3223.1.S1_at--580--7451Chr03:7178194..7178218 (25 bp)
GTGTCACCAGGTTTCGTCTCAAGCA
LOC_Os03g13340
OsAffx.3223.1.S1_at--639--2151Chr03:7178157..7178181 (25 bp)
ACAGCTCCGTGCTTCGTCCAGGTGT
LOC_Os03g13340
OsAffx.3223.1.S1_at--459--10671Chr03:7178124..7178148 (25 bp)
TTCCTACAGGGTGCGCAAGCATGAC
LOC_Os03g13340
Target Sequence 
ATGCAAATAACCTCGTACGCCATGCATCCCGACGGGCGCACCGTCTTCGTGTCCGCCACGAGTGGCAAGCACCACGGCAC
GTTCTCCTCCTCCCTCGACGACGACGACGACAACGAGTGGACGCGCCGCGGCGACTGGCTGCTGCCGTTCCATGGCCAGG
GCCACTACGACGCCAAGCTGCGCGCATGGGTCGGCCTCCACTCGCCAGGGCACGTGTGCACCTGCGACGTCCCGTCCACC
ACCTTCAGTAGTGTGGCGGCGGCGACGTCGCAGCCGCCGGCGTGGCAGCTGGTGAACGCGGAGCACCTCTTCCAGGAGGA
TCATCCGGAGCGCGGCGGCACGTCGCTGGTGTCCACGGGCGACGCCGAGTTCTGCATCGTGGAGTCCGTGACGCCGAAAT
GGATGGATCCGGTGTGGGATCGCGACGAGATCGACGAGTACGTGCTCCGTGTCACCAGGTTTCGTCTCAAGCACGACCGG
CACGGACAGCTCCGTGCTTCGTCCAGGTGTCGCCGCGCTTCCTACAGGGTGCGCAAGCATGAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis