Browse Element(s) Details


OsAffx.32255.1.A1_at

Description gb:X15901.1
DB_XREF= gi:11957
TID=OsAffx.32255.1
CNT=1
FEA=DNA_36
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=unnamed protein product; ORF106 (Oryza sativa (japonica cultivar-group)) chloroplast
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g289603/11DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os04g025001/11G-patch domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g28910OsAffx.25270.3.S1_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28910OsAffx.25270.3.S1_x_at11/113+16352011..16352877hypothetical protein
LOC_Os03g28920OsAffx.3356.1.S1_at11/113+16355344..16355721hypothetical protein
LOC_Os03g28930Os.38884.2.S1_x_at10/113+16357275..16360869transposon protein, putative, Mutator sub-class
LOC_Os03g28940Os.4695.1.S1_s_at11/113+16362456..16364801ZIM motif family protein, expressed
LOC_Os03g28950OsAffx.17052.1.S1_at9/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.17052.2.S1_at3/113+16371414..16372751AC transposase, putative
LOC_Os03g28950OsAffx.25414.1.S1_at1/113+16371414..16372751AC transposase, putative
LOC_Os03g28960Os.23203.1.S1_at11/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.19953.5.S1_x_at4/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32255.1.A1_at3/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28960OsAffx.32241.1.A1_at1/113+16375821..16394233DNA-directed RNA polymerase III 130 kDa polypeptide, putative, expressed
LOC_Os03g28969OsAffx.2602.1.S1_at6/113+16398365..16400882hypothetical protein
LOC_Os03g28969Os.5300.1.S1_at1/113+16398365..16400882hypothetical protein
LOC_Os03g28980Os.49781.1.S1_x_at9/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28980Os.49781.1.S1_at7/113+16404167..16406513WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g28990OsAffx.3357.1.S1_s_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g28990Os.51900.1.S1_at11/113+16412303..16414199von Willebrand factor type A domain containing protein, expressed
LOC_Os03g29000NANA3+16415531..16415863hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006306biological_processDNA methylation
GO:0006350biological_processtranscription
GO:0030422biological_processRNA interference, production of siRNA
GO:0031047biological_processRNA-mediated gene silencing
GO:0035194biological_processRNA-mediated posttranscriptional gene silencing
GO:0005622cellular_componentintracellular
GO:0005634cellular_componentnucleus
GO:0005720cellular_componentnuclear heterochromatin
GO:0016591cellular_componentDNA-directed RNA polymerase II, holoenzyme
GO:0030880cellular_componentRNA polymerase complex
GO:0003676molecular_functionnucleic acid binding
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed RNA polymerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32255.1.A1_at--473--9875Chr12:11085257..11085281 (25 bp)
TACTTCCTTCCACATGCAATACTTA
NONE
OsAffx.32255.1.A1_at--293--5195Chr12:11085272..11085296 (25 bp)
GCAATACTTATTCAACCACTCTCGG
NONE
OsAffx.32255.1.A1_at--1131--8093Chr06:23584949..23584973 (25 bp)
GGACCCCACAAATCCGCTGTAAGGA
NONE
OsAffx.32255.1.A1_at--566--5675Chr12:11085331..11085355 (25 bp)
GACTTTTAGTTGATTGATATTGCCG
NONE
OsAffx.32255.1.A1_at--297--8835Chr12:11085345..11085369 (25 bp)
TGATATTGCCGTAAAGTTGAAACTT
NONE
OsAffx.32255.1.A1_at--744--9837Chr12:11085386..11085410 (25 bp)
TAAACTGTAATTTCCTCTCTGCATA
NONE
OsAffx.32255.1.A1_at--269--9516Chr12:11085401..11085425 (25 bp)
TCTCTGCATACGTGCTCTTCTAGAA
NONE
OsAffx.32255.1.A1_at--605--7314Chr12:11085412..11085436 (25 bp)
GTGCTCTTCTAGAAGCATATACAAT
NONE
OsAffx.32255.1.A1_at--611--3094Chr12:11085433..11085457 (25 bp)
CAATAATGCGCGGTAAAGGAGGGAA
NONE
OsAffx.32255.1.A1_at--738--3095Chr12:11085458..11085482 (25 bp)
AATAGCATACTCAATCAAGGGACAA
NONE
OsAffx.32255.1.A1_at--595--8134Chr12:11085477..11085501 (25 bp)
GGACAAATTCTTTTACCTACTACAG
NONE
Target Sequence 
TACTTCCTTCCACATGCAATACTTATTCAACCACTCTCGGACCCCACAAATCCGCTGTAAGGATTGATACATAGGACTTT
TAGTTGATTGATATTGCCGTAAAGTTGAAACTTTTTTAGGCTTTTTTATTAAACTGTAATTTCCTCTCTGCATACGTGCT
CTTCTAGAAGCATATACAATAATGCGCGGTAAAGGAGGGAAAATAGCATACTCAATCAAGGGACAAATTCTTTTACCTAC
TACAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32255.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis