Browse Element(s) Details


OsAffx.32292.1.S1_x_at

Description gb:BA000029.2
DB_XREF= gi:47118326
GEN=atp9
TID=OsAffx.32292.1
CNT=1
FEA=DNA_34
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP synthase F0 subunit 9 (Oryza sativa (japonica cultivar-group)) mitochondrion
PROD=ATP synthase F0 subunit 9
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g3411011/11ATP synthase subunit C family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g34100OsAffx.7786.1.S1_at11/1112+20608433..20610797hypothetical protein
LOC_Os12g34110OsAffx.32292.1.S1_x_at11/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S1_at10/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.2.S1_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110OsAffx.23061.1.S2_at9/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34110Os.13521.1.S1_at2/1112+20622985..20629882ATP synthase subunit C family protein
LOC_Os12g34120OsAffx.19957.1.S1_at8/1112+20637962..20639692hypothetical protein
LOC_Os12g34130OsAffx.32254.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.32253.1.S1_x_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.6.S1_s_at11/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.1.S1_x_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34130OsAffx.19953.2.S1_at10/1112+20644220..20647428Mitochondrial ribosomal protein S3, putative
LOC_Os12g34140NANA12+20650665..20654319retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0015992biological_processproton transport
GO:0016887molecular_functionATPase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.32292.1.S1_x_at--119--8092Chr12:20627038..20627062 (25 bp)
GGAGCTGCTACAATTGCTTTAGCGG
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--1158--2232Chr12:20627029..20627053 (25 bp)
ACAATTGCTTTAGCGGGAGCTGCTG
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--929--5893Chr12:20627013..20627037 (25 bp)
GAGCTGCTGTCGGTATTGGAAACGT
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--659--6853Chr12:20627001..20627025 (25 bp)
GTATTGGAAACGTCCTCAGTTCTTC
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--963--9633Chr12:20626986..20627010 (25 bp)
TCAGTTCTTCGATTCATTCCGTGGC
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--906--6553Chr12:20626976..20627000 (25 bp)
GATTCATTCCGTGGCGCGAAATCCT
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--634--4573Chr12:20626963..20626987 (25 bp)
GCGCGAAATCCTTCATTGGCTAAAC
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--14--7891Chr12:20626930..20626954 (25 bp)
GGTTATGCCATTTTGGGCTTTGCTC
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--191--171Chr12:20626921..20626945 (25 bp)
ATTTTGGGCTTTGCTCTCACCGAAG
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--1021--10271Chr12:20626912..20626936 (25 bp)
TTTGCTCTCACCGAAGCTATTGCAT
LOC_Os12g34110
OsAffx.32292.1.S1_x_at--85--3371Chr12:20626904..20626928 (25 bp)
CACCGAAGCTATTGCATTGTTTGCC
LOC_Os12g34110
Target Sequence 
GGAGCTGCTACAATTGCTTTAGCGGGAGCTGCTGTCGGTATTGGAAACGTCCTCAGTTCTTCGATTCATTCCGTGGCGCG
AAATCCTTCATTGGCTAAACAATTATTTGGTTATGCCATTTTGGGCTTTGCTCTCACCGAAGCTATTGCATTGTTTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.32292.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis