Browse Element(s) Details


OsAffx.3253.1.S1_at

Description tigr:9631.m01631
TID=OsAffx.3253.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1671811/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3253.1.S1_at--109--8771Chr03:9240965..9240989 (25 bp)
TGTATATTACCCTGAGTCTGCTCCC
LOC_Os03g16718
OsAffx.3253.1.S1_at--262--8491Chr03:9240939..9240963 (25 bp)
TGGCTAGCTTGGCACCTTCAGAGAG
LOC_Os03g16718
OsAffx.3253.1.S1_at--972--3851Chr03:9240909..9240933 (25 bp)
CTGACAGTGACTACATACCTGGTGA
LOC_Os03g16718
OsAffx.3253.1.S1_at--665--311Chr03:9240895..9240919 (25 bp)
ATACCTGGTGATGTTTGTCCATCTG
LOC_Os03g16718
OsAffx.3253.1.S1_at--315--6351Chr03:9240787..9240811 (25 bp)
GATGCTGTTTTCTTTGAGCAAGACA
LOC_Os03g16718
OsAffx.3253.1.S1_at--308--5311Chr03:9240620..9240644 (25 bp)
GAAGGATGGAGTTCCCACATTTGAA
LOC_Os03g16718
OsAffx.3253.1.S1_at--712--5731Chr03:9240475..9240499 (25 bp)
GACTGGGATACCTGTCAATGGGTCT
LOC_Os03g16718
OsAffx.3253.1.S1_at--951--7071Chr03:9240462..9240486 (25 bp)
GTCAATGGGTCTGTTTGCTATCAAA
LOC_Os03g16718
OsAffx.3253.1.S1_at--597--5471Chr03:9240437..9240461 (25 bp)
GAACTCCAGGTCTGACAGTTGGCAA
LOC_Os03g16718
OsAffx.3253.1.S1_at--103--10131Chr03:9240403..9240427 (25 bp)
TATGAGAGCTTGCATGCTTGCCCAC
LOC_Os03g16718
OsAffx.3253.1.S1_at--442--7371Chr03:9240358..9240382 (25 bp)
GTGACAGCCACAAGGATTGCTCAGA
LOC_Os03g16718
Target Sequence 
TGTATATTACCCTGAGTCTGCTCCCCTGGCTAGCTTGGCACCTTCAGAGAGTGAATCTGACAGTGACTACATACCTGGTG
ATGTTTGTCCATCTGATGATGATGAAGAGGCTGCTGAAATAGAGAAGCATTACAAAGAAGTGAAGAAGAAGATTAAGACT
GGACAGTTAGAAGACCTAGATGCTGTTTTCTTTGAGCAAGACAGGTCCAAGCCAATTGAAGAACTTGGCAGTGATGGGGA
GGTTAGGATAAGGCAGGACAAACATCCAAGATATAAGAAGAAGGATGGAGTTCCCACATTTGAACTTGGCATGAAGTTCA
ATTGCAAGAATCAGTTCAAGAAGGCCATCACAAAATATGCATTAGCTGAGAAGAAGGTGATCAATTTTATAAAAGATGAT
CAGAAAAGGGTCAGGGGCAAGTGTGACTGGGATACCTGTCAATGGGTCTGTTTGCTATCAAAGAACTCCAGGTCTGACAG
TTGGCAAATTGTGACATATGAGAGCTTGCATGCTTGCCCACCAAGGAGGGATAACAAGATGGTGACAGCCACAAGGATTG
CTCAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3253.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis