Browse Element(s) Details


OsAffx.3254.1.S1_at

Description tigr:9631.m01633
TID=OsAffx.3254.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g167308/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g16700Os.7945.2.S1_s_at11/113+9226400..9231661initiator-binding protein, putative, expressed
LOC_Os03g16709NANA3+9239122..9239870hypothetical protein
LOC_Os03g16718OsAffx.3253.1.S1_at11/113+9240323..9244394hypothetical protein
LOC_Os03g16718OsAffx.31578.4.S1_at10/113+9240323..9244394hypothetical protein
LOC_Os03g16718Os.3192.1.S1_at1/113+9240323..9244394hypothetical protein
LOC_Os03g16730Os.53240.1.A1_x_at11/113+9245130..9249712expressed protein
LOC_Os03g16730OsAffx.3254.1.S1_at8/113+9245130..9249712expressed protein
LOC_Os03g16740Os.20802.1.S1_at11/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16740Os.55715.1.S1_at1/113+9248664..9252631Protein kinase APK1B, chloroplast precursor, putative, expressed
LOC_Os03g16750NANA3+9257616..9260219hypothetical protein
LOC_Os03g16760Os.25002.1.S1_at11/113+9264379..9267908Protein phosphatase 2C containing protein, expressed
LOC_Os03g16770OsAffx.12885.1.S1_at11/113+9272855..9274164hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3254.1.S1_at--137--2111Chr03:9249338..9249362 (25 bp)
ACAGTTTAACACAAGCCACGGGCTC
LOC_Os03g16730
OsAffx.3254.1.S1_at--247--2191Chr03:9249414..9249438 (25 bp)
ACACATTATGTTCTCACGGATTCAG
LOC_Os03g16730
OsAffx.3254.1.S1_at--856--3751Chr03:9249463..9249487 (25 bp)
CTCATCACTCTAGTTCCTGTTTTTA
LOC_Os03g16730
OsAffx.3254.1.S1_at--1055--2851Chr03:9249498..9249522 (25 bp)
AAGTGTCTCACGATCAGGATGCTCC
LOC_Os03g16730
OsAffx.3254.1.S1_at--347--5991Chr03:9249548..9249572 (25 bp)
GAGACATTTGACGACACCAGACAGC
LOC_Os03g16730
OsAffx.3254.1.S1_at--399--3571Chr03:9249573..9249597 (25 bp)
CATAATTCTACTTGGCTGCTTTCTT
LOC_Os03g16730
OsAffx.3254.1.S1_at--607--10271Chr03:9249596..9249620 (25 bp)
TTTGCACCTTGAAGCTGCTCCAGCG
LOC_Os03g16730
OsAffx.3254.1.S1_at--1061--9031Chr03:9249648..9249672 (25 bp)
TGCATCGTGCATCCATTGACAGGCA
LOC_Os03g16730
OsAffx.3254.1.S1_at--192--6391Chr03:9249722..9249746 (25 bp)
GATCCCAGGCGTGAGTCGAGGACAT
NONE
OsAffx.3254.1.S1_at--474--691Chr03:9249749..9249773 (25 bp)
ATGACCCTCCTCTTGTTGGTGATGT
NONE
OsAffx.3254.1.S1_at--39--7391Chr03:9249767..9249791 (25 bp)
GTGATGTAAGGTCTAGCCCACTCCA
NONE
Target Sequence 
ACAGTTTAACACAAGCCACGGGCTCGCAGTTGGAGCAAAGGAGCAACAGCTAGCTGTACAAAAAGCAAGATATATTACAC
ATTATGTTCTCACGGATTCAGAAAGCCTGTCCTCTGATCAAGTCCCTCATCACTCTAGTTCCTGTTTTTAACTCCTATCA
AAGTGTCTCACGATCAGGATGCTCCAGGAGAGGTAGAGACTGGTCTACTGGAGACATTTGACGACACCAGACAGCCATAA
TTCTACTTGGCTGCTTTCTTTGCACCTTGAAGCTGCTCCAGCGCGGTCACAACCTGATCCATGCCCGGCCTGCATCGTGC
ATCCATTGACAGGCACTGCACCGCAAGCCCCGCGATCTTCTGCGCAGCTGGAAGCGAATACTGGGATCCCAGGCGTGAGT
CGAGGACATGGATGACCCTCCTCTTGTTGGTGATGTAAGGTCTAGCCCACTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3254.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis