Browse Element(s) Details


OsAffx.3262.1.S1_s_at

Description tigr:9631.m01737
TID=OsAffx.3262.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g1768011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g17634Os.52224.1.S1_at11/113+9778147..9801118pentatricopeptide, putative, expressed
LOC_Os03g17660OsAffx.3261.1.S1_at11/113+9801893..9806030expressed protein
LOC_Os03g17660Os.24403.1.A1_at11/113+9801893..9806030expressed protein
LOC_Os03g17670NANA3+9807199..9807949hypothetical protein
LOC_Os03g17680OsAffx.3262.1.S1_s_at11/113+9811825..9812028expressed protein
LOC_Os03g17690Os.12723.1.S1_at9/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17690OsAffx.18972.1.S1_at1/113+9822378..9825786L-ascorbate peroxidase 1, cytosolic, putative, expressed
LOC_Os03g17700Os.406.1.S1_a_at11/113+9826769..9829502Mitogen-activated protein kinase homolog 6, putative, expressed
LOC_Os03g17710Os.8079.1.S1_at11/113+9831821..9835072RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3262.1.S1_s_at--486--5671Chr03:9811891..9811915 (25 bp)
GACATCAAGAGGAAGATCGTGCAGG
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--1091--3551Chr03:9811893..9811917 (25 bp)
CATCAAGAGGAAGATCGTGCAGGAT
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--719--9711Chr03:9811895..9811919 (25 bp)
TCAAGAGGAAGATCGTGCAGGATGT
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--250--2811Chr03:9811903..9811927 (25 bp)
AAGATCGTGCAGGATGTGTTCGGCA
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--24--1291Chr03:9811904..9811928 (25 bp)
AGATCGTGCAGGATGTGTTCGGCAA
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--272--511Chr03:9811906..9811930 (25 bp)
ATCGTGCAGGATGTGTTCGGCAAGT
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--76--9431Chr03:9811907..9811931 (25 bp)
TCGTGCAGGATGTGTTCGGCAAGTC
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--309--6271Chr03:9811915..9811939 (25 bp)
GATGTGTTCGGCAAGTCGTCGGATC
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--38--791Chr03:9811916..9811940 (25 bp)
ATGTGTTCGGCAAGTCGTCGGATCC
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--708--8671Chr03:9811917..9811941 (25 bp)
TGTGTTCGGCAAGTCGTCGGATCCC
LOC_Os03g17680
OsAffx.3262.1.S1_s_at--104--7431Chr03:9811918..9811942 (25 bp)
GTGTTCGGCAAGTCGTCGGATCCCC
LOC_Os03g17680
Target Sequence 
GACATCAAGAGGAAGATCGTGCAGGATGTGTTCGGCAAGTCGTCGGATCCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3262.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis