Browse Element(s) Details


OsAffx.3344.1.S1_at

Description tigr:9631.m02717
TID=OsAffx.3344.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative serine carboxypeptidase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2751011/11serine carboxypeptidase S10 family protein, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27460Os.12818.1.S1_at11/113+15731130..15734868DnaJ domain containing protein, expressed
LOC_Os03g27470NANA3+15736320..15737638hypothetical protein
LOC_Os03g27480Os.54354.1.S1_at10/113+15742324..15746072Serine carboxypeptidase family protein, expressed
LOC_Os03g27484NANA3+15749223..15751936hypothetical protein
LOC_Os03g27490OsAffx.13076.1.S1_at11/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29308.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27490OsAffx.29823.1.S1_x_at1/113+15752953..15754866hypothetical protein
LOC_Os03g27510OsAffx.3344.1.S1_at11/113+15758873..15763677serine carboxypeptidase S10 family protein, putative
LOC_Os03g27520OsAffx.9572.1.S1_at1/113+15765275..15767372transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27530OsAffx.25255.1.S1_at10/113+15768495..15775420Retinoid-inducible serine carboxypeptidase precursor, putative
LOC_Os03g27540NANA3+15776756..15779725transposon protein, putative, Pong sub-class, expressed
LOC_Os03g27550NANA3+15780048..15780673serine carboxypeptidase S10 family protein, putative
LOC_Os03g27560OsAffx.10931.3.S1_at11/113+15785028..15785884hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006508biological_processproteolysis
GO:0004185molecular_functionserine carboxypeptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3344.1.S1_at--345--9031Chr03:15760293..15760317 (25 bp)
TGCAGACATTCACGGACCTTCTGTA
LOC_Os03g27510
OsAffx.3344.1.S1_at--1037--10591Chr03:15760275..15760299 (25 bp)
TTCTGTACCTGATCGACTCCAAGAG
LOC_Os03g27510
OsAffx.3344.1.S1_at--475--8791Chr03:15760000..15760024 (25 bp)
TGTTCAACTACATGACTGGCACCGG
LOC_Os03g27510
OsAffx.3344.1.S1_at--108--10171Chr03:15759912..15759936 (25 bp)
TATCTCGGCAGGGACATCTCAACGA
LOC_Os03g27510
OsAffx.3344.1.S1_at--716--2571Chr03:15759882..15759906 (25 bp)
AACGGCGTCATCAAGCGGAAGCTCA
LOC_Os03g27510
OsAffx.3344.1.S1_at--936--8231Chr03:15759724..15759748 (25 bp)
GGCAACAGTTTTCGCTTGATGTCTA
LOC_Os03g27510
OsAffx.3344.1.S1_at--1111--6311Chr03:15759570..15759594 (25 bp)
GATGAACTGTTATCTCTCGGTGTCA
LOC_Os03g27510
OsAffx.3344.1.S1_at--231--1331Chr03:15759105..15759129 (25 bp)
AGAGGAAACCACTGCATTTCTGCCT
LOC_Os03g27510
OsAffx.3344.1.S1_at--663--10211Chr03:15759071..15759095 (25 bp)
TATTCCCAATGGCTTCGTGAAGGCA
LOC_Os03g27510
OsAffx.3344.1.S1_at--1039--2511Chr03:15759040..15759064 (25 bp)
AACTTACAGCACTATTCGATCCTTC
LOC_Os03g27510
OsAffx.3344.1.S1_at--566--10511Chr03:15758934..15759042 (25 bp)
TTCAAGCTGGACAAGCGGTGCCGGT
LOC_Os03g27510
Target Sequence 
TGCAGACATTCACGGACCTTCTGTACCTGATCGACTCCAAGAGTGATAGCGTCGTAAAACATGTTCAACTACATGACTGG
CACCGGCATGGGCATGATGCTAATAACGGGCGGCAACACACCGGAAGCTGCTCGTCGCCATTGACGAGGTATCTCGGCAG
GGACATCTCAACGATCATGAACGGCGTCATCAAGCGGAAGCTCAAGATAATCCCCAAGGACCTTGTGTGGCAACAGTTTT
CGCTTGATGTCTACGAGGCGATGAAAAACGATTTCATGAGGCCAGCCATCAACGTGGTGGATGAACTGTTATCTCTCGGT
GTCAACGTCACATTGTATAATGGACAGAGGAAACCACTGCATTTCTGCCTCCCCTACTATATTCCCAATGGCTTCGTGAA
GGCACACAAAAACTTACAGCACTATTCGATCCTTCAAGCTGGACAAGCGGTGCCGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3344.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis