Browse Element(s) Details


OsAffx.3347.1.S1_at

Description tigr:9631.m02730
TID=OsAffx.3347.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2763010/11hypothetical protein
LOC_Os05g243601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g380701/11retrotransposon protein, putative, unclassified
LOC_Os08g292301/11hypothetical protein
LOC_Os05g206301/11hypothetical protein
LOC_Os07g278341/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g036501/11retrotransposon protein, putative, unclassified
LOC_Os06g288901/11hypothetical protein
LOC_Os08g052201/11retrotransposon protein, putative, unclassified
LOC_Os04g160101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g266001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os12g216001/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g077601/11retrotransposon protein, putative, unclassified
LOC_Os07g291701/11transposon protein, putative, CACTA, En/Spm sub-class, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27590Os.50043.1.A1_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.50043.1.A1_x_at11/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_x_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.1.S1_at10/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27590Os.26833.2.S1_at3/113+15802425..15807865Serine carboxypeptidase family protein, expressed
LOC_Os03g27610Os.7429.1.S1_at11/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.4.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27610OsAffx.32056.3.S1_x_at1/113+15815375..15817181Patatin-like phospholipase family protein, expressed
LOC_Os03g27630OsAffx.3347.1.S1_at10/113+15820661..15821849hypothetical protein
LOC_Os03g27640NANA3+15824387..15826313retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27650NANA3+15826801..15827559retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g27670Os.26886.2.S1_s_at10/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.6.S1_s_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670OsAffx.16467.1.S1_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.3.S1_x_at5/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27680OsAffx.25256.1.S1_at11/113+15842539..15845950hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3347.1.S1_at--13--7551Chr03:15821762..15821786 (25 bp)
GTGGCGGCGCAGGATGAAGGCAACC
LOC_Os03g27630
OsAffx.3347.1.S1_at--1105--8531Chr03:15821688..15821712 (25 bp)
TGGAGCTCGCGAGGAGAGGATTTCC
LOC_Os03g27630
OsAffx.3347.1.S1_at--967--991Chr03:15821672..15821696 (25 bp)
AGGATTTCCGGCGACAGCGGAAGAA
LOC_Os03g27630
OsAffx.3347.1.S1_at--964--10411Chr03:15821610..15821629 (20 bp)
TTATAGGCATGGGAGCTCGGTGCTC
LOC_Os03g27630
OsAffx.3347.1.S1_at--1072--271Chr03:15821146..15821627 (25 bp)
ATAGGCATGGGAGCTCGGTGCTCAA
LOC_Os03g27630
OsAffx.3347.1.S1_at--484--481129Chr12:5659696..5659995 (25 bp)
GCTCGGTGCTCAAATAATTTCAAGA
NONE
OsAffx.3347.1.S1_at--262--351NONE
ATAACACTCAAAATAAACCGAGGAG
NONE
OsAffx.3347.1.S1_at--262--4471Chr03:15820780..15820804 (25 bp)
GCCGGGGTCTCTGCGAATGAGTTAA
LOC_Os03g27630
OsAffx.3347.1.S1_at--599--8911Chr03:15820740..15820764 (25 bp)
TGACCGTAGTCGATGGGACAACCTG
LOC_Os03g27630
OsAffx.3347.1.S1_at--236--4031Chr03:15820736..15820760 (25 bp)
CGTAGTCGATGGGACAACCTGGGCA
LOC_Os03g27630
OsAffx.3347.1.S1_at--701--1131Chr03:15820733..15820757 (25 bp)
AGTCGATGGGACAACCTGGGCAGAA
LOC_Os03g27630
Target Sequence 
GTGGCGGCGCAGGATGAAGGCAACCAGGACGACGGCGCACGGTGGCTGGAGCGACGGCCAGCGGCGGAGAGAGGTGGAGC
TCGCGAGGAGAGGATTTCCGGCGACAGCGGAAGAAGGGGGAGGTGGCGGCCGAAAGAGGAGAGGGAGGGGGCTCTATTTA
TAGGCATGGGAGCTCGGTGCTCAAATAATTTCAAGAAAAATCCAGAAAATAATATAACACTCAAAATAAACCGAGGAGGA
GATCAAAGCGCCGGGGTCTCTGCGAATGAGTTAAGGCTGATGGAGATGGTGACCGTAGTCGATGGGACAACCTGGGCAGA
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3347.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis