Browse Element(s) Details


OsAffx.3348.1.S1_at

Description tigr:9631.m02737
TID=OsAffx.3348.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2770010/11hypothetical protein
LOC_Os05g122001/11TNP2, putative
LOC_Os08g211701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g233201/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os01g339701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os02g179601/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g474461/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g242001/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os08g353701/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g306101/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os07g291001/11transposon protein, putative, CACTA, En/Spm sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27670Os.26886.2.S1_s_at10/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.6.S1_s_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670OsAffx.16467.1.S1_at9/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27670Os.26886.3.S1_x_at5/113+15834046..15836977transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27680OsAffx.25256.1.S1_at11/113+15842539..15845950hypothetical protein
LOC_Os03g27690OsAffx.13082.1.S1_at11/113+15852435..15852743hypothetical protein
LOC_Os03g27700OsAffx.3348.1.S1_at10/113+15856534..15860546hypothetical protein
LOC_Os03g27700OsAffx.14655.1.S1_at1/113+15856534..15860546hypothetical protein
LOC_Os03g27710OsAffx.29576.5.S1_at5/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.19006.1.S1_at3/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710Os.54924.1.S1_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27710OsAffx.10155.1.S1_x_at1/113+15862286..15866754retrotransposon protein, putative, unclassified
LOC_Os03g27720Os.47463.1.S1_x_at6/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27720Os.14491.2.S1_x_at5/113+15867784..15868773transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27730NANA3+15869253..15875240transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27740OsAffx.25257.1.S1_at11/113+15880442..15880855expressed protein
LOC_Os03g27750OsAffx.25258.2.S1_x_at11/113+15884347..15885626hypothetical protein
LOC_Os03g27750OsAffx.25258.2.S1_at11/113+15884347..15885626hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3348.1.S1_at--601--6032Chr02:12934003..12934443 (25 bp)
GAGATGTTGGCACTCTCTCTCTGAT
NONE
OsAffx.3348.1.S1_at--181--6711Chr03:15859071..15859095 (25 bp)
GTTCGATAGCACCATTGAGACTTTA
LOC_Os03g27700
OsAffx.3348.1.S1_at--918--7611Chr03:15858979..15859003 (25 bp)
GGGAAGAGCTTCACCATATGGATAA
LOC_Os03g27700
OsAffx.3348.1.S1_at--682--96311Chr08:12642821..12643283 (25 bp)
TCATGGTTCATATCGTGCCTCAGAT
LOC_Os08g21170
OsAffx.3348.1.S1_at--16--4291Chr03:15858518..15858542 (25 bp)
CCTGCATCGGATGTGGCCATTTGAA
LOC_Os03g27700
OsAffx.3348.1.S1_at--927--6551Chr03:15858259..15858506 (25 bp)
GATTCTAAAAGGCTATCTCGCGGTA
LOC_Os03g27700
OsAffx.3348.1.S1_at--416--10151NONE
TATCTCGCGGTAGTGGAGCTGTACA
NONE
OsAffx.3348.1.S1_at--517--2291Chr03:15858183..15858215 (25 bp)
AAATGTCCGGCGCTCTGATGATGAA
LOC_Os03g27700
OsAffx.3348.1.S1_at--353--5491Chr03:15856665..15856689 (25 bp)
GAACATATGCGTGAGCCTATTGGCT
LOC_Os03g27700
OsAffx.3348.1.S1_at--792--1671Chr03:15856652..15856676 (25 bp)
AGCCTATTGGCTTTCTGAACCCTTG
LOC_Os03g27700
OsAffx.3348.1.S1_at--412--5451Chr03:15856636..15856660 (25 bp)
GAACCCTTGCCGAATAAGTCAGCTG
LOC_Os03g27700
Target Sequence 
GAGATGTTGGCACTCTCTCTCTGATCTTGTATCTCAATGGATGCTTCTTTTGGAAAAATTTGTTCGATAGCACCATTGAG
ACTTTACTAGACACACCAAGCAAGACAAAGGATGGGCTGAAGTCACATAAGGACCTTGTAAATATGCAATTAAGGGAAGA
GCTTCACCATATGGATAAAGCACCTCATGGTTCATATCGTGCCTCAGATACTTGCACTTGGGCCCTGTACCTGCATCGGA
TGTGGCCATTTGAATGGTACATGTCGATTCTAAAAGGCTATCTCGCGGTAGTGGAGCTGTACATAGAGCAGCACCTGAAG
AACTACAAGCAACAAATGTCCGGCGCTCTGATGATGAATTATGTCATAGTAGAACATATGCGTGAGCCTATTGGCTTTCT
GAACCCTTGCCGAATAAGTCAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3348.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis