Browse Element(s) Details


OsAffx.3360.1.S1_at

Description tigr:9631.m02850
TID=OsAffx.3360.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2924411/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29212NANA3+16561969..16565106retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g29220NANA3+16569718..16571769retrotransposon protein, putative, LINE subclass
LOC_Os03g29222NANA3+16573418..16575700retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29224NANA3+16576343..16578548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g29230NANA3+16579344..16579685retrotransposon protein, putative, unclassified
LOC_Os03g29240Os.6150.1.S1_s_at11/113+16583311..16586842PDI, putative, expressed
LOC_Os03g29244OsAffx.3360.1.S1_at11/113+16589202..16589525hypothetical protein
LOC_Os03g29250OsAffx.13105.1.S1_at11/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29250Os.51747.1.S1_x_at1/113+16600081..16600913SPX domain-containing protein, putative, expressed
LOC_Os03g29260Os.183.1.S1_at9/113+16609096..16613259EF-1 guanine nucleotide exchange domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3360.1.S1_at--411--4551Chr03:16589257..16589281 (25 bp)
GCGCCGGCGCATACCGGTTCACGGA
LOC_Os03g29244
OsAffx.3360.1.S1_at--222--8391Chr03:16589262..16589286 (25 bp)
GGCGCATACCGGTTCACGGAGGAGA
LOC_Os03g29244
OsAffx.3360.1.S1_at--575--7711Chr03:16589347..16589371 (25 bp)
GGGTGAGCGGGCACGCGCCGTTCGA
LOC_Os03g29244
OsAffx.3360.1.S1_at--320--991Chr03:16589371..16589395 (25 bp)
AGGAGGACGTGCTCGTGCTGACGCG
LOC_Os03g29244
OsAffx.3360.1.S1_at--834--8391Chr03:16589403..16589427 (25 bp)
GGCGCGTCACCGGTGCGGCGAGTGC
LOC_Os03g29244
OsAffx.3360.1.S1_at--213--4851Chr03:16589438..16589462 (25 bp)
GTTGGTTACTCGTGGTCGTACTGGT
LOC_Os03g29244
OsAffx.3360.1.S1_at--480--10471Chr03:16589443..16589467 (25 bp)
TTACTCGTGGTCGTACTGGTGTGAG
LOC_Os03g29244
OsAffx.3360.1.S1_at--360--9931Chr03:16589456..16589480 (25 bp)
TACTGGTGTGAGCAAGCGCGACTTC
LOC_Os03g29244
OsAffx.3360.1.S1_at--697--8611Chr03:16589459..16589483 (25 bp)
TGGTGTGAGCAAGCGCGACTTCCAC
LOC_Os03g29244
OsAffx.3360.1.S1_at--230--7391Chr03:16589463..16589487 (25 bp)
GTGAGCAAGCGCGACTTCCACCTGG
LOC_Os03g29244
OsAffx.3360.1.S1_at--1041--1651Chr03:16589470..16589494 (25 bp)
AGCGCGACTTCCACCTGGCGTGCGT
LOC_Os03g29244
Target Sequence 
GCGCCGGCGCATACCGGTTCACGGAGGAGAGGCTGGAGGAGCTGGAGCGGGAGGTGGACGGCGAGGCCGCGGCGGCGGGG
TGGCCGGGCAGGGTGAGCGGGCACGCGCCGTTCGAGGAGGACGTGCTCGTGCTGACGCGCCGCCGCGGCGCGTCACCGGT
GCGGCGAGTGCGGCGGGTGGGGTTGGTTACTCGTGGTCGTACTGGTGTGAGCAAGCGCGACTTCCACCTGGCGTGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3360.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis