Browse Element(s) Details


OsAffx.3363.1.S1_at

Description tigr:9631.m02872
TID=OsAffx.3363.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative ribosomal protein L27a
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2946011/1160S ribosomal protein L27a-3, putative, expressed
LOC_Os05g083101/11retrotransposon protein, putative, unclassified
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g29420OsAffx.3361.1.S1_at11/113+16720317..16721451hypothetical protein
LOC_Os03g29430Os.24648.1.A1_at1/113+16726136..16730428retrotransposon, putative, centromere-specific
LOC_Os03g29440NANA3+16733964..16736672retrotransposon protein, putative, unclassified
LOC_Os03g29460OsAffx.3363.1.S1_at11/113+16742191..1674290460S ribosomal protein L27a-3, putative, expressed
LOC_Os03g29470Os.6140.1.S1_s_at11/113+16749243..16754470Transcription initiation factor IID, 31kD subunit family protein, expressed
LOC_Os03g29480OsAffx.29552.2.S1_at11/113+16759292..16760863GRAS family transcription factor containing protein, expressed
LOC_Os03g29490OsAffx.13109.1.S1_at11/113+16765676..16767075hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0005840cellular_componentribosome
GO:0015934cellular_componentlarge ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3363.1.S1_at--776--3351Chr03:16742674..16742698 (25 bp)
CACCGCCTAGGTACTACATACTTGG
LOC_Os03g29460
OsAffx.3363.1.S1_at--521--3731Chr03:16742687..16742711 (25 bp)
CTACATACTTGGGAGTTGAGTTGGA
LOC_Os03g29460
OsAffx.3363.1.S1_at--1104--6131Chr03:16742717..16742741 (25 bp)
GAGGGTTCTTGATATCTAAGGCGCT
LOC_Os03g29460
OsAffx.3363.1.S1_at--765--451Chr03:16742730..16742754 (25 bp)
ATCTAAGGCGCTAGTTTCTTTATCC
LOC_Os03g29460
OsAffx.3363.1.S1_at--700--4571Chr03:16742737..16742761 (25 bp)
GCGCTAGTTTCTTTATCCTTCAAAA
LOC_Os03g29460
OsAffx.3363.1.S1_at--906--2431Chr03:16742758..16742782 (25 bp)
AAAAGACTTTGATTTAGCTCTTGTG
LOC_Os03g29460
OsAffx.3363.1.S1_at--200--4831Chr03:16742774..16742798 (25 bp)
GCTCTTGTGCTTTTTCTGTTATGGA
LOC_Os03g29460
OsAffx.3363.1.S1_at--875--10291Chr03:16742786..16742810 (25 bp)
TTTCTGTTATGGATGTTACTACTGT
LOC_Os03g29460
OsAffx.3363.1.S1_at--1048--2011Chr03:16742803..16742827 (25 bp)
ACTACTGTATGGTATGGCTACTTGA
LOC_Os03g29460
OsAffx.3363.1.S1_at--682--8311Chr03:16742818..16742842 (25 bp)
GGCTACTTGAATCTGTGGTGGCAAT
LOC_Os03g29460
OsAffx.3363.1.S1_at--200--8632Chr03:16742833..16742857 (25 bp)
TGGTGGCAATTCAGGAGTTTTGAAT
LOC_Os03g29460
Target Sequence 
CACCGCCTAGGTACTACATACTTGGGAGTTGAGTTGGAGGGAGGAGGGTTCTTGATATCTAAGGCGCTAGTTTCTTTATC
CTTCAAAAGACTTTGATTTAGCTCTTGTGCTTTTTCTGTTATGGATGTTACTACTGTATGGTATGGCTACTTGAATCTGT
GGTGGCAATTCAGGAGTTTTGAAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3363.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis