Browse Element(s) Details


OsAffx.3449.1.S1_at

Description tigr:9631.m03812
TID=OsAffx.3449.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g3965011/11Cytochrome P450 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g39640OsAffx.3448.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39640Os.17963.1.S1_at11/113+21971580..21984229CBS domain containing protein, expressed
LOC_Os03g39650OsAffx.3449.1.S1_at11/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39650Os.47994.1.S1_x_at1/113+22003097..22007169Cytochrome P450 family protein, expressed
LOC_Os03g39660OsAffx.25440.1.S1_s_at11/113+22011391..22013092hypothetical protein
LOC_Os03g39660OsAffx.252.1.S1_x_at3/113+22011391..22013092hypothetical protein
LOC_Os03g39670NANA3+22023668..22024786retrotransposon protein, putative, unclassified
LOC_Os03g39680OsAffx.22684.1.S1_at11/113+22030346..22031587retrotransposon protein, putative, LINE subclass

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Gene Ontology Classification
GO idTypeName
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3449.1.S1_at--967--6291Chr03:22004292..22004316 (25 bp)
GATGATGTCGCCAAGCTGAGCTACC
LOC_Os03g39650
OsAffx.3449.1.S1_at--749--8811Chr03:22004368..22004392 (25 bp)
TGATCCCCAGGGAGTGCCGCGAGAC
LOC_Os03g39650
OsAffx.3449.1.S1_at--766--4071Chr03:22004387..22004411 (25 bp)
CGAGACGTGCCAGGTCATGGGCTAT
LOC_Os03g39650
OsAffx.3449.1.S1_at--506--1071Chr03:22004422..22004446 (25 bp)
AGGGCACCAAGGTCTTTGTCAACGT
LOC_Os03g39650
OsAffx.3449.1.S1_at--554--8331Chr03:22004537..22004561 (25 bp)
GGCGGACTTTGAGTTCATCCCGTTT
LOC_Os03g39650
OsAffx.3449.1.S1_at--394--991Chr03:22004574..22004598 (25 bp)
AGGATGTGTCCTGGTATAGCGCTAG
LOC_Os03g39650
OsAffx.3449.1.S1_at--1151--3631Chr03:22004655..22004679 (25 bp)
CTTCCCGACGGCATCAAATCTGAGG
LOC_Os03g39650
OsAffx.3449.1.S1_at--913--1351Chr03:22007027..22007051 (25 bp)
AGAGAGAGCTCCATCCTATATCTGC
LOC_Os03g39650
OsAffx.3449.1.S1_at--534--9253Chr05:20496427..20496450 (24 bp)
TCCTATATCTGCGTTCATTGTCTAC
NONE
OsAffx.3449.1.S1_at--614--6731Chr03:22007104..22007128 (25 bp)
GTTCTACATCATCTCATGTCTCTAC
LOC_Os03g39650
OsAffx.3449.1.S1_at--879--9512Chr03:22007115..22007139 (25 bp)
TCTCATGTCTCTACTGCTGTGGAAG
LOC_Os03g39650
Target Sequence 
GATGATGTCGCCAAGCTGAGCTACCTGCAGCTGGTGATCAAGGAGACCCTACGGCTACACCCGCCAGCGCCACTCCTGAT
CCCCAGGGAGTGCCGCGAGACGTGCCAGGTCATGGGCTATGATGTGCCAAAGGGCACCAAGGTCTTTGTCAACGTGTGGA
AGATAGGCAGGGAAGGCGAATATTGGGGCGATGGCGAGATATTTAGGCCAGAGAGATTTGAGAATAGTACAGTTGATTTT
AGAGGGGCGGACTTTGAGTTCATCCCGTTTGGAGCTGGGCGGAGGATGTGTCCTGGTATAGCGCTAGGTTTAGCTAATAT
GGAGCTTGCTCTTGCTAGCCTTCTTTACCACTTTGATTGGGAGCTTCCCGACGGCATCAAATCTGAGGAGCTAGACATGA
CAGAGGTATTTGGTATCACGATGAGATCTATAATGAAGAGAGAGCTCCATCCTATATCTGCGTTCATTGTCTACTTCTGC
AATATTCTTGATGGCAACGGGATGGGCGCGGGTGTTCTACATCATCTCATGTCTCTACTGCTGTGGAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3449.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis