Browse Element(s) Details


OsAffx.3496.1.S1_x_at

Description tigr:9631.m04154
TID=OsAffx.3496.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4315011/11retrotransposon protein, putative, unclassified
LOC_Os07g249203/11retrotransposon protein, putative, unclassified
LOC_Os05g158302/11retrotransposon protein, putative, unclassified
LOC_Os03g431801/11retrotransposon protein, putative, unclassified
LOC_Os09g064301/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g43114OsAffx.25508.1.S1_s_at11/113+24003465..24008078expressed protein
LOC_Os03g43114Os.50212.1.S1_at11/113+24003465..24008078expressed protein
LOC_Os03g43114OsAffx.25508.1.S1_at1/113+24003465..24008078expressed protein
LOC_Os03g43130Os.34588.2.S1_at1/113+24009763..24012841transposon protein, putative, unclassified
LOC_Os03g43140OsAffx.25509.1.S1_at11/113+24014481..24015525hypothetical protein
LOC_Os03g43150OsAffx.3496.1.S1_x_at11/113+24030486..24030842retrotransposon protein, putative, unclassified
LOC_Os03g43150OsAffx.21269.1.S1_x_at1/113+24030486..24030842retrotransposon protein, putative, unclassified
LOC_Os03g43160Os.51869.1.S1_at2/113+24033489..24037024retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g43169NANA3+24038247..24038749retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g43180OsAffx.3496.1.S1_x_at1/113+24039272..24039595retrotransposon protein, putative, unclassified
LOC_Os03g43180OsAffx.21269.1.S1_x_at1/113+24039272..24039595retrotransposon protein, putative, unclassified
LOC_Os03g43190NANA3+24041278..24041917retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g43200OsAffx.18258.1.S1_at1/113+24046540..24047715retrotransposon protein, putative, unclassified
LOC_Os03g43210NANA3+24049442..24052639hypothetical protein
LOC_Os03g43220OsAffx.22699.1.S1_x_at1/113+24052971..24059968retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3496.1.S1_x_at--477--75910Chr10:11922991..11923010 (20 bp)
GGGCTATCCGAGGACACCTACGCAA
NONE
OsAffx.3496.1.S1_x_at--305--957Chr08:6941958..6942296 (25 bp)
AGGACACCTACGCAAAGAGGACGAC
NONE
OsAffx.3496.1.S1_x_at--467--1834Chr09:743612..743634 (23 bp)
ACGACGCAAACTCACCGGTGCAAGA
NONE
OsAffx.3496.1.S1_x_at--905--2195Chr07:14165777..14165800 (24 bp)
AAACTCACCGGTGCAAGAAACTATG
LOC_Os07g24920
OsAffx.3496.1.S1_x_at--163--5552Chr07:14165792..14165816 (25 bp)
GAAACTATGACGGACGACGACGTAC
LOC_Os07g24920
OsAffx.3496.1.S1_x_at--208--9291Chr03:24030677..24030701 (25 bp)
TCCGACAACGGCATGGCTCGGCTCG
LOC_Os03g43150
OsAffx.3496.1.S1_x_at--227--4231Chr03:24030676..24030700 (25 bp)
CCGACAACGGCATGGCTCGGCTCGA
LOC_Os03g43150
OsAffx.3496.1.S1_x_at--265--4111Chr03:24030675..24030699 (25 bp)
CGACAACGGCATGGCTCGGCTCGAC
LOC_Os03g43150
OsAffx.3496.1.S1_x_at--1084--5611Chr03:24030674..24030698 (25 bp)
GACAACGGCATGGCTCGGCTCGACG
LOC_Os03g43150
OsAffx.3496.1.S1_x_at--149--3251Chr03:24030672..24030696 (25 bp)
CAACGGCATGGCTCGGCTCGACGTC
LOC_Os03g43150
OsAffx.3496.1.S1_x_at--197--871Chr03:24030665..24030689 (25 bp)
ATGGCTCGGCTCGACGTCGATGGCG
LOC_Os03g43150
Target Sequence 
GGGCTATCCGAGGACACCTACGCAAAGAGGACGACGACGCAAACTCACCGGTGCAAGAAACTATGACGGACGACGACGTA
CGACGGCCGGTGACGAGCTCCGACAACGGCATGGCTCGGCTCGACGTCGATGGCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3496.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis