Browse Element(s) Details


OsAffx.3509.1.S1_at

Description tigr:9631.m04262
TID=OsAffx.3509.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g441597/11hypothetical protein
LOC_Os05g337005/114F5 protein family protein
LOC_Os02g491301/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g44140OsAffx.25531.1.S1_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.1.S1_x_at11/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44140OsAffx.25531.2.S1_x_at1/113+24752003..24761445Calcium binding EGF domain containing protein, expressed
LOC_Os03g44150Os.18830.1.S2_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44150Os.18830.1.S1_at11/113+24764250..24772266ornithine aminotransferase, putative, expressed
LOC_Os03g44159OsAffx.3509.1.S1_at7/113+24776997..24778157hypothetical protein
LOC_Os03g44170Os.56896.1.S1_at10/113+24779575..24780776Glutathione S-transferase, N-terminal domain containing protein, expressed
LOC_Os03g44180OsAffx.24252.1.S1_x_at2/113+24783093..24783852hypothetical protein
LOC_Os03g44190Os.52810.1.S1_at11/113+24788114..24789396expressed protein
LOC_Os03g44200Os.17074.1.S1_at11/113+24789804..24795501Beclin-1, putative, expressed
LOC_Os03g44210Os.53656.1.S1_at11/113+24797431..24799821PPR986-12, putative, expressed
LOC_Os03g44220OsAffx.25533.1.S1_at9/113+24800559..24802274hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3509.1.S1_at--637--7191NONE
GTCGGCACCGGGAACCTCCTGACAT
NONE
OsAffx.3509.1.S1_at--239--8251NONE
GGCACCGGGAACCTCCTGACATGTG
NONE
OsAffx.3509.1.S1_at--488--1771NONE
ACCGGGAACCTCCTGACATGTGGTT
NONE
OsAffx.3509.1.S1_at--841--3311NONE
CGGGAACCTCCTGACATGTGGTTCC
NONE
OsAffx.3509.1.S1_at--356--10416Chr11:10053055..10053077 (23 bp)
TTATTTTCCCGGGATCCAATTGCAC
NONE
OsAffx.3509.1.S1_at--80--15Chr11:10053057..10053077 (21 bp)
ATTTTCCCGGGATCCAATTGCACGT
NONE
OsAffx.3509.1.S1_at--1061--10292Chr05:19751603..19751628 (25 bp)
TTTCCCGGGATCCAATTGCACGTAA
LOC_Os05g33700
OsAffx.3509.1.S1_at--965--10633Chr05:19751604..19751629 (25 bp)
TTCCCGGGATCCAATTGCACGTAAG
LOC_Os05g33700
OsAffx.3509.1.S1_at--440--9313Chr05:19751605..19751630 (25 bp)
TCCCGGGATCCAATTGCACGTAAGC
LOC_Os05g33700
OsAffx.3509.1.S1_at--340--3973Chr03:24778071..24778095 (25 bp)
CGGGATCCAATTGCACGTAAGCGCC
LOC_Os03g44159
OsAffx.3509.1.S1_at--1137--6358Chr06:26527144..26527168 (24 bp)
GATCCAATTGCACGTAAGCGCCACG
NONE
Target Sequence 
GTCGGCACCGGGAACCTCCTGACATGTGGTTCCCACGGTTTTTTATTATTTTCCCGGGATCCAATTGCACGTAAGCGCCA
CG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3509.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis