Browse Element(s) Details


OsAffx.3521.1.S1_at

Description tigr:9631.m04415
TID=OsAffx.3521.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g4559011/11retrotransposon protein, putative, unclassified
LOC_Os10g110701/11retrotransposon protein, putative, unclassified
LOC_Os12g282401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os08g109401/11retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g369001/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g45550NANA3+25653782..25659033retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os03g45560OsAffx.10020.1.S1_x_at1/113+25659805..25660167retrotransposon protein, putative, unclassified
LOC_Os03g45560OsAffx.9790.1.S1_x_at1/113+25659805..25660167retrotransposon protein, putative, unclassified
LOC_Os03g45570NANA3+25673515..25676402transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g45580OsAffx.13365.1.S1_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45580OsAffx.13365.1.S1_x_at11/113+25679220..25680497Zinc knuckle family protein, expressed
LOC_Os03g45590OsAffx.3521.1.S1_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.3521.1.S1_x_at11/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.2.S1_x_at4/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.27088.1.A1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.46012.3.S1_x_at2/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590OsAffx.30387.1.S1_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45590Os.45902.1.A1_x_at1/113+25681048..25686261retrotransposon protein, putative, unclassified
LOC_Os03g45619Os.10596.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619Os.51541.1.S1_at11/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.13368.1.S1_at10/113+25700226..25714876Cytochrome P450 family protein, expressed
LOC_Os03g45619OsAffx.21533.1.S1_at1/113+25700226..25714876Cytochrome P450 family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3521.1.S1_at--881--8811Chr03:25682030..25682054 (25 bp)
TGTTGTTCTTGCTACGGGTTGTGTC
LOC_Os03g45590
OsAffx.3521.1.S1_at--109--6651Chr03:25682031..25682055 (25 bp)
GTTGTTCTTGCTACGGGTTGTGTCA
LOC_Os03g45590
OsAffx.3521.1.S1_at--369--10551Chr03:25682035..25682059 (25 bp)
TTCTTGCTACGGGTTGTGTCAAGGT
LOC_Os03g45590
OsAffx.3521.1.S1_at--576--3631Chr03:25682037..25682061 (25 bp)
CTTGCTACGGGTTGTGTCAAGGTAA
LOC_Os03g45590
OsAffx.3521.1.S1_at--160--8691Chr03:25682039..25682063 (25 bp)
TGCTACGGGTTGTGTCAAGGTAAGT
LOC_Os03g45590
OsAffx.3521.1.S1_at--255--3731Chr03:25682041..25682065 (25 bp)
CTACGGGTTGTGTCAAGGTAAGTGA
LOC_Os03g45590
OsAffx.3521.1.S1_at--321--1913Chr03:25682043..25682067 (25 bp)
ACGGGTTGTGTCAAGGTAAGTGACA
LOC_Os03g45590
OsAffx.3521.1.S1_at--209--6634Chr03:25682047..25682071 (25 bp)
GTTGTGTCAAGGTAAGTGACAAGTT
LOC_Os03g45590
OsAffx.3521.1.S1_at--1032--2411Chr03:25682080..25682104 (25 bp)
AAAACATAGCTTTGGTTGCAGACTT
LOC_Os03g45590
OsAffx.3521.1.S1_at--959--2391Chr03:25682081..25682105 (25 bp)
AAACATAGCTTTGGTTGCAGACTTA
LOC_Os03g45590
OsAffx.3521.1.S1_at--657--2511Chr03:25682082..25682106 (25 bp)
AACATAGCTTTGGTTGCAGACTTAA
LOC_Os03g45590
Target Sequence 
TGTTGTTCTTGCTACGGGTTGTGTCAAGGTAAGTGACAAGTTTGAATTGAAAAACATAGCTTTGGTTGCAGACTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3521.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis