Browse Element(s) Details

OsAffx.3576.1.S1_s_at

Description

tigr:9631.m05032
TID=OsAffx.3576.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os03g51510	11/11	Mitochondrial 60S ribosomal protein L6, putative, expressed

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os03g51470	Os.10468.1.S1_at	11/11	3	+	29401687..29404169	expressed protein
LOC_Os03g51479	Os.55664.1.S1_at	11/11	3	+	29405538..29411288	Maf-like protein, expressed
LOC_Os03g51479	Os.31771.2.S1_at	11/11	3	+	29405538..29411288	Maf-like protein, expressed
LOC_Os03g51479	Os.31771.2.S1_x_at	11/11	3	+	29405538..29411288	Maf-like protein, expressed
LOC_Os03g51479	Os.31771.1.S1_at	11/11	3	+	29405538..29411288	Maf-like protein, expressed
LOC_Os03g51479	OsAffx.5618.1.S1_at	1/11	3	+	29405538..29411288	Maf-like protein, expressed
LOC_Os03g51479	OsAffx.5618.1.S1_x_at	1/11	3	+	29405538..29411288	Maf-like protein, expressed
LOC_Os03g51490	Os.31771.3.S1_at	10/11	3	+	29407570..29409263	expressed protein
LOC_Os03g51510	OsAffx.3576.1.S1_s_at	11/11	3	+	29413483..29416252	Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51510	Os.7389.1.S1_at	11/11	3	+	29413483..29416252	Mitochondrial 60S ribosomal protein L6, putative, expressed
LOC_Os03g51520	Os.25317.1.S1_at	11/11	3	+	29418244..29428601	Fip1 motif family protein, expressed
LOC_Os03g51530	Os.54698.1.S1_at	11/11	3	+	29429795..29430440	expressed protein
LOC_Os03g51540	Os.33892.2.S1_x_at	10/11	3	+	29430880..29435426	Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51540	Os.33892.1.S1_at	8/11	3	+	29430880..29435426	Lariat debranching enzyme, C-terminal domain containing protein, expressed
LOC_Os03g51550	Os.25532.1.S1_a_at	10/11	3	+	29436578..29441090	Will die slowly protein, putative, expressed

Select all/Clear all

Gene Ontology Classification

GO id	Type	Name
GO:0006412	biological_process	protein biosynthesis
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.3576.1.S1_s_at--431--183	1	Chr03:29413567..29413591 (25 bp)	ACGCGACTGGGAGTCGACGGCGCGA	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--273--701	1	Chr03:29415492..29415516 (25 bp)	GTGACTAGGAAACAAGCTTTTCTCT	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--648--95	1	Chr03:29415498..29415522 (25 bp)	AGGAAACAAGCTTTTCTCTGTTGGA	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--765--553	1	Chr03:29415500..29415524 (25 bp)	GAAACAAGCTTTTCTCTGTTGGATA	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--1049--221	1	Chr03:29415503..29415527 (25 bp)	ACAAGCTTTTCTCTGTTGGATATAC	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--335--271	1	Chr03:29415505..29415529 (25 bp)	AAGCTTTTCTCTGTTGGATATACCT	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--247--489	1	Chr03:29415507..29415531 (25 bp)	GCTTTTCTCTGTTGGATATACCTCT	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--835--1031	1	Chr03:29415510..29415534 (25 bp)	TTTCTCTGTTGGATATACCTCTTCT	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--782--951	1	Chr03:29415512..29415536 (25 bp)	TCTCTGTTGGATATACCTCTTCTCT	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--399--947	1	Chr03:29415514..29415538 (25 bp)	TCTGTTGGATATACCTCTTCTCTTG	LOC_Os03g51510
OsAffx.3576.1.S1_s_at--482--387	1	Chr03:29415515..29415539 (25 bp)	CTGTTGGATATACCTCTTCTCTTGT	LOC_Os03g51510

Target Sequence

ACGCGACTGGGAGTCGACGGCGCGACAGCGACGCGGAGCTCTCCCCGGCGGCGGTGCTCTCTCCTCCGGCGACCGCCCCC
TCCGCTGGCCACCTTCTCACCGGTGACTAGGAAACAAGCTTTTCTCTGTTGGATATACCTCTTCTCTTGT

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis