Browse Element(s) Details


OsAffx.3585.1.S1_at

Description tigr:9631.m05148
TID=OsAffx.3585.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=putative fertility restorer-like protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g5262011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g52594Os.11862.1.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.11862.2.S1_at11/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51354.1.S1_at2/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52594Os.51430.1.S1_at1/113+30107546..30124489NOT2/NOT3/NOT5 family protein, expressed
LOC_Os03g52620OsAffx.3585.1.S1_at11/113+30130103..30131323pentatricopeptide, putative
LOC_Os03g52630Os.10701.1.S1_at11/113+30132228..30135671endo-1,4-beta-glucanase Cel1, putative, expressed
LOC_Os03g52640Os.27782.1.S1_at11/113+30138771..30142128expressed protein
LOC_Os03g52650OsAffx.3586.1.S1_s_at11/113+30143453..30144678Syntaxin-related protein KNOLLE, putative, expressed
LOC_Os03g52660Os.5148.1.S1_at11/113+30147820..30149331ATP synthase F1, delta subunit family protein, expressed
LOC_Os03g52670Os.37935.1.S1_at11/113+30149372..30150915GRAM domain containing protein, expressed
LOC_Os03g52680Os.18485.1.S1_s_at11/113+30154305..30155477expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3585.1.S1_at--232--8291Chr03:30130839..30130863 (25 bp)
GGCTTGAGCCGGATGTCGTGACCTA
LOC_Os03g52620
OsAffx.3585.1.S1_at--681--6271Chr03:30130850..30130874 (25 bp)
GATGTCGTGACCTACAACTGTTTGA
LOC_Os03g52620
OsAffx.3585.1.S1_at--723--2551Chr03:30130865..30130889 (25 bp)
AACTGTTTGATCAATGGCCTATGCA
LOC_Os03g52620
OsAffx.3585.1.S1_at--743--2751Chr03:30130889..30130913 (25 bp)
AAGACATACCGTGTCGAGCGCGCGC
LOC_Os03g52620
OsAffx.3585.1.S1_at--481--7711Chr03:30130959..30130983 (25 bp)
GGGTGACTTACAATTCCTTTGTGAG
LOC_Os03g52620
OsAffx.3585.1.S1_at--662--5671Chr03:30131062..30131086 (25 bp)
GACATCGAGCACATATACGCCTATT
LOC_Os03g52620
OsAffx.3585.1.S1_at--884--9951Chr03:30131077..30131101 (25 bp)
TACGCCTATTATCCACTCTTTGTGT
LOC_Os03g52620
OsAffx.3585.1.S1_at--904--6191Chr03:30131120..30131144 (25 bp)
GAGGCAAGGCAGTTCATTATCGAAA
LOC_Os03g52620
OsAffx.3585.1.S1_at--64--1111Chr03:30131153..30131177 (25 bp)
AGTGGGCATCTTCCAAGGGAGCACA
LOC_Os03g52620
OsAffx.3585.1.S1_at--896--911Chr03:30131220..30131244 (25 bp)
AGGCTTTGCCGGTAGAGCTGTGTCA
LOC_Os03g52620
OsAffx.3585.1.S1_at--469--7451Chr03:30131239..30131263 (25 bp)
GTGTCAGTCTATTGATGCTGGCATC
LOC_Os03g52620
Target Sequence 
GGCTTGAGCCGGATGTCGTGACCTACAACTGTTTGATCAATGGCCTATGCAAGACATACCGTGTCGAGCGCGCGCACGAG
GTGTTTGATGAAATGCTAAGGAAGGGGTGCTCACCAAACAGGGTGACTTACAATTCCTTTGTGAGGTATTATAGCGTGGT
GAATGAGGTGGACAAGGCTGTTAAGTGGATGAGGGAGATGGTGGCGAGGGGGCATGGGGGAGCGACATCGAGCACATATA
CGCCTATTATCCACTCTTTGTGTGAGATTGGACGGATTAGTGAGGCAAGGCAGTTCATTATCGAAATGGCTGAAAGTGGG
CATCTTCCAAGGGAGCACACATACAAGCTTGTGAAAGATGAAATTGAGAAGGCGCATGAGGAGGCTTTGCCGGTAGAGCT
GTGTCAGTCTATTGATGCTGGCATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3585.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis