Browse Element(s) Details


OsAffx.3613.1.S1_x_at

Description tigr:9631.m05413
TID=OsAffx.3613.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g143403/11transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g417103/11retrotransposon protein, putative, unclassified
LOC_Os01g331363/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os01g310203/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os10g169502/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os07g123602/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g067502/11retrotransposon protein, putative, unclassified
LOC_Os06g089702/11retrotransposon protein, putative, unclassified
LOC_Os10g231102/11hypothetical protein
LOC_Os07g262901/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g064001/11retrotransposon protein, putative, unclassified
LOC_Os03g360501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g458301/11expressed protein
LOC_Os01g034521/11hypothetical protein
LOC_Os04g202401/11retrotransposon protein, putative, unclassified
LOC_Os08g279001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g14300Os.18747.1.S1_at11/1111+8013867..8022134La domain-containing protein, putative, expressed
LOC_Os11g14310OsAffx.18845.1.S1_at11/1111+8028280..8028558hypothetical protein
LOC_Os11g14320Os.48823.1.A1_at1/1111+8030712..8032688hypothetical protein
LOC_Os11g14330OsAffx.31892.2.S1_x_at1/1111+8034361..8041580retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os11g14340Os.10731.1.A1_a_at11/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_at5/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340Os.48015.1.A1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.31869.5.S1_x_at3/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.3613.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.27522.1.S1_x_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14340OsAffx.20509.1.S1_at2/1111+8044721..8049734transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.14491.2.S1_x_at3/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350Os.47463.1.S1_x_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14350OsAffx.20057.1.S1_at1/1111+8052533..8055913transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os11g14360OsAffx.7107.1.S1_at11/1111+8058529..8060562Zinc knuckle family protein
LOC_Os11g14370OsAffx.20973.1.S1_at1/1111+8064348..8066349hypothetical protein
LOC_Os11g14380Os.48915.1.S1_at10/1111+8067905..8073534NB-ARC domain containing protein, expressed
LOC_Os11g14380Os.55130.1.S1_at1/1111+8067905..8073534NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3613.1.S1_x_at--382--51111Chr06:4526785..4526898 (25 bp)
GCACATGCGCTGGCATGGTGCGCAT
LOC_Os06g08970
OsAffx.3613.1.S1_x_at--618--8549Chr11:23494136..23494334 (25 bp)
ATGGCACATGCGCTAAGAACTCCAG
NONE
OsAffx.3613.1.S1_x_at--881--33147Chr11:23494140..23494338 (25 bp)
CACATGCGCTAAGAACTCCAGGGTT
NONE
OsAffx.3613.1.S1_x_at--353--38135Chr11:26639454..26639711 (25 bp)
CTCCAGGGTTAAGCGCATGGTGCGC
NONE
OsAffx.3613.1.S1_x_at--418--853Chr03:31511480..31511504 (25 bp)
ATGGCTGGTACTGGACACATGGCGC
NONE
OsAffx.3613.1.S1_x_at--99--2191Chr03:31511494..31511518 (25 bp)
ACACATGGCGCGTGTGTCGCAATTG
NONE
OsAffx.3613.1.S1_x_at--487--871Chr03:31511498..31511522 (25 bp)
ATGGCGCGTGTGTCGCAATTGCGCA
NONE
OsAffx.3613.1.S1_x_at--1020--91553Chr11:8046538..8046603 (25 bp)
TGCGCATGGCTGGTACTGGACACAT
LOC_Os11g14340
OsAffx.3613.1.S1_x_at--1104--2091Chr03:31511568..31511589 (22 bp)
ACATGCGCTGGTACTGGACGGGCAT
NONE
OsAffx.3613.1.S1_x_at--544--8091Chr03:31511555..31511701 (25 bp)
GGACGGGCATGGTGCGCTTGGCTGG
NONE
OsAffx.3613.1.S1_x_at--233--81511Chr12:3136549..3136736 (25 bp)
GGACACATGGACGTGCATGGCACAT
NONE
Target Sequence 
GCACATGCGCTGGCATGGTGCGCATGGCTGGTACTGGACACATGGACGTGCATGGCACATGCGCTAAGAACTCCAGGGTT
AAGCGCATGGTGCGCATGGCTGGTACTGGACACATGGCGCGTGTGTCGCAATTGCGCAGGCATGGTGCGCATGGCTGGTA
CTGGACACATGGACGTGCATGGCACATGCGCTGGTACTGGACGGGCATGGTGCGCTTGGCTGGTACTGGACACATGGACG
TGCATGGCACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3613.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis