Browse Element(s) Details


OsAffx.3674.1.S1_at

Description tigr:9631.m06162
TID=OsAffx.3674.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g6238811/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g62340Os.9205.1.S1_x_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340Os.9205.1.S1_s_at11/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62340OsAffx.25794.1.S1_at1/113+35251687..35256292Protein kinase domain containing protein, expressed
LOC_Os03g62350Os.35344.18.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350Os.35344.3.S1_x_at9/113+35265693..35267285hypothetical protein
LOC_Os03g62350OsAffx.22940.5.S1_x_at3/113+35265693..35267285hypothetical protein
LOC_Os03g62360NANA3+35268944..35269576hypothetical protein
LOC_Os03g62370Os.49694.1.S1_at11/113+35271028..35273340WD40-like Beta Propeller Repeat family protein, expressed
LOC_Os03g62379OsAffx.25795.1.S1_at10/113+35274340..35276037Myb-like DNA-binding domain containing protein, expressed
LOC_Os03g62388OsAffx.3674.1.S1_at11/113+35276862..35279517hypothetical protein
LOC_Os03g62400OsAffx.25796.1.S1_at10/113+35284103..35287960pentatricopeptide, putative
LOC_Os03g62410Os.52881.1.S1_at11/113+35289129..35293830Phospholipase D gamma 3, putative, expressed
LOC_Os03g62420OsAffx.13583.1.S1_at11/113+35295028..35297793expressed protein
LOC_Os03g62430Os.49388.1.S1_at9/113+35299723..35304099Calcium binding EGF domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.3674.1.S1_at--564--8931Chr03:35277599..35277623 (25 bp)
TGACCCAGAGAATCAATACCATGAG
LOC_Os03g62388
OsAffx.3674.1.S1_at--226--7951Chr03:35277471..35277495 (25 bp)
GGATACCTGAGCATACCGCTGATGA
LOC_Os03g62388
OsAffx.3674.1.S1_at--769--5291Chr03:35277436..35277460 (25 bp)
GAAGACTTTGGTGAACCTCCATCTG
LOC_Os03g62388
OsAffx.3674.1.S1_at--1093--7351Chr03:35277426..35277450 (25 bp)
GTGAACCTCCATCTGACGAACAAGA
LOC_Os03g62388
OsAffx.3674.1.S1_at--1000--691Chr03:35277387..35277411 (25 bp)
ATGAGTACACCGCTAGAGGCAAGCA
LOC_Os03g62388
OsAffx.3674.1.S1_at--538--5431Chr03:35277322..35277346 (25 bp)
GAACCTTCGAGAGGTACCAAGCGCA
LOC_Os03g62388
OsAffx.3674.1.S1_at--97--6571Chr03:35277202..35277226 (25 bp)
GATTCATCGGTGGAACAACCTGAGA
LOC_Os03g62388
OsAffx.3674.1.S1_at--1142--1751Chr03:35277185..35277209 (25 bp)
ACCTGAGAAGAAGCTTACACACCGA
LOC_Os03g62388
OsAffx.3674.1.S1_at--172--9891Chr03:35277047..35277071 (25 bp)
TACTAGAAACACCTGATCACGAGAT
LOC_Os03g62388
OsAffx.3674.1.S1_at--1094--6371Chr03:35277021..35277045 (25 bp)
GATCGCATGAAGCTAAGTGTGACAC
LOC_Os03g62388
OsAffx.3674.1.S1_at--95--7471Chr03:35277005..35277029 (25 bp)
GTGTGACACATCTTAGACTGTTACA
LOC_Os03g62388
Target Sequence 
TGACCCAGAGAATCAATACCATGAGGGGGAGCCATATGATCATGTTATTGAACAAGAGCCAGAAAGGGATGCCAGAGAAA
CAGGAACATCAATGAAATTACGAAACAGGAGAAAATTACAAAAAGATGGGATACCTGAGCATACCGCTGATGATATCATG
GATGAAGACTTTGGTGAACCTCCATCTGACGAACAAGATAATGATAGTGGTGATGAGTACACCGCTAGAGGCAAGCAGAA
GGGCAGGAGAAAATCAAGGGAGAAAAATATTAACAAAGAACCTTCGAGAGGTACCAAGCGCACCTCGGGGGATTCCACTA
TAGAGGAATCACAGAAGCAGAAGCTTCAGAAAAATAAAAGTAAAGCATCTTCAGGGGGTCAGAAGAAAACATCAAAAGAT
TCATCGGTGGAACAACCTGAGAAGAAGCTTACACACCGAATTCGTCGAAAGAGAATGGAAGAAGTCAAGACTTTACTAGA
AACACCTGATCACGAGATAGATCGCATGAAGCTAAGTGTGACACATCTTAGACTGTTACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.3674.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis